Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04740 802 / 0 ankyrin repeat family protein (.1) AT5G19000 48 / 1e-05 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT3G43700 44 / 0.0002 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT2G39760 44 / 0.0003 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT3G06190 44 / 0.0003 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT4G35450 43 / 0.0005 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006408 [exp] 630 / 0 AT2G04740 473 / 2e-164 ankyrin repeat family protein (.1) Lus10006409 [exp] 150 / 1e-42 AT2G04740 140 / 1e-39 ankyrin repeat family protein (.1) Lus10041235 [exp] 50 / 1e-06 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10021946 [exp] 50 / 3e-06 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10003365 [exp] 49 / 6e-06 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10010527 [exp] 49 / 7e-06 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10008421 [exp] 49 / 8e-06 AT3G03740 599 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10034070 [exp] 49 / 1e-05 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10036033 [exp] 43 / 0.0002 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G163200 [exp] 868 / 0 AT2G04740 827 / 0.0 ankyrin repeat family protein (.1) Potri.001G184200 [exp] 55 / 5e-08 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.010G029500 [exp] 54 / 3e-07 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.009G156500 [exp] 52 / 6e-07 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.004G194200 [exp] 49 / 7e-06 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.008G200700 [exp] 48 / 1e-05 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.002G052700 [exp] 48 / 2e-05 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.008G150100 [exp] 44 / 0.0002 AT5G19330 1045 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.009G070700 [exp] 42 / 0.0002 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.001G276100 [exp] 42 / 0.0003 AT5G12320 191 / 1e-63 ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10012362 pacid=23176780 polypeptide=Lus10012362 locus=Lus10012362.g ID=Lus10012362.BGIv1.0 annot-version=v1.0 ATGTCTCCGCATACCATGGACCCAATCGACCTCGATGACATCAACCTCGACTCTTCTGATTTCAACACTTCCCTTCGCCTCAAGAAGGTCCCCAACGGCG ACATCTTCGAAGCCTCTCGTGCCGGCGACGTCGACCGCCTCCGCTACCACTTGGATTCCGGCGTCAACGTCAACGCTCGCGACCAATGGGATTCCGTCGC CTTGTACTACGCCTGTCTTGCTGGCCATCTCGAGGCTGCTCGTATGCTGCTCGAAAGCGGTGCTATTTGCTCCGAGCATACCTTCGACGGCGATAGGTGC CACTATGCCGCCTTGAATTTGAAAGTCAGGAAGCTTTTGAAAGCATTCGAAGCTCGTCCGCCTCCTTTAGGTCCTCTGCCCGCCGCCTTGCGTGATGTTT TCTTGAGTTGCGCCGCCAATAGGGCGTATTTGGAGCTTGTTGAAGGCAGCTCCCAAGTTCCAGGTGTTTCATTTGGTGGTGCACCGAATTCCAACCACTT CCCTCCTGATGTGGTGTTTTTTGTGCAAGGTAGGCCTGTTGAGGCTCATAGAGTTATACTAAGTGCACGTTCTCCGTTCTTTAAGAAGAAGTTAGAAACG GATTGGAGGGATCGAAGGGAAGTAAGGTTTGCCAAGGAGAAGCTCTCTTATCCTGCTCTCTTCTGCCTCCTTCATTTCTTCTATTCCGACAGACTAGAAG TTGCAGTTGATGATATGGAAGGTCTTGTAAGAATCTGTAAAGTGTGCAAATGCGAGTCGTTACAGAGAATTCTTGAAAACGAACTAGTTCACCAGAAATT CGCAGAATACAAGGCCTTGAAAGATGTGGACAATACCCAGAAGCGATTCATCCTACAGGGATCCTCCCTGCCTGAGGAAGACCGGCTTCCAGCTTCATTA CATCGAATTCTTAAGACTTCTCTGGGAAGGTCCACTTTGGACCAAACCCCTGATAATAGAATCATTGATAAGCTGGTTCGTTGTTTTGACGCGGTGCAGA CAAGCGATTGTGTAAATGATCTAGCTGATGTTTGTATTAGGGTGGAGAAGAAGGTTTTCCACTGTCATCAAGTAGTTTTAGCTGCAAGGTCCGAGTATTT TAGAGCTAGATTGTCCCGTATGAAGGACTTTAATGAAGGGAAGAATGGGTTGAGTGGGGATGTTCTTCCGTGCATTGAAGAACATGACTTGAGCATGGAG GCTTTTGAGAAGATGCTCGAGTATATGTACACTGATGCTTTAACAGATATTGATCCAGATCAGGTGGAGGAAATGTTTGATGCTGCATCAAGGTATCTGC TATTTCCTCTGAAGCGTGCTGTTGCTGATGTACTGTTGCCACATCTCGAAAATGCTTCACCGGTAGAGATTTGCCATTGGTTGATATTATCGGACATGTA CGGCGTGCTGAAGACCCGTGAGTACTGCCTCAACGTAATAGCTTGTGATTTTGAGACATTTGCTGACACTCGAGAGTTCCGAGCAATGCTATTAACCCTT CCGCCCCCATCTGGAGACTCCTCGTTGCGAACGACTGCCCCGAGTGCTCCCGGAGGAGTTGTTGACACAGACCAGGCGAATCTTCTTGATGATCTGAGAG AGCAGTGGCTGGAAGCTGAAGCTGCAGAGCTCAATAAGCGAGACGAGAGTGCGCTGATCTTCGACAAACGCCTGGAGATGCTTATGCTCGTGGCGGAGAA CGAGAAAGGCGATGGAACTGACTGA
AA sequence Show only first row Show all	>Lus10012362 pacid=23176780 polypeptide=Lus10012362 locus=Lus10012362.g ID=Lus10012362.BGIv1.0 annot-version=v1.0 MSPHTMDPIDLDDINLDSSDFNTSLRLKKVPNGDIFEASRAGDVDRLRYHLDSGVNVNARDQWDSVALYYACLAGHLEAARMLLESGAICSEHTFDGDRC HYAALNLKVRKLLKAFEARPPPLGPLPAALRDVFLSCAANRAYLELVEGSSQVPGVSFGGAPNSNHFPPDVVFFVQGRPVEAHRVILSARSPFFKKKLET DWRDRREVRFAKEKLSYPALFCLLHFFYSDRLEVAVDDMEGLVRICKVCKCESLQRILENELVHQKFAEYKALKDVDNTQKRFILQGSSLPEEDRLPASL HRILKTSLGRSTLDQTPDNRIIDKLVRCFDAVQTSDCVNDLADVCIRVEKKVFHCHQVVLAARSEYFRARLSRMKDFNEGKNGLSGDVLPCIEEHDLSME AFEKMLEYMYTDALTDIDPDQVEEMFDAASRYLLFPLKRAVADVLLPHLENASPVEICHWLILSDMYGVLKTREYCLNVIACDFETFADTREFRAMLLTL PPPSGDSSLRTTAPSAPGGVVDTDQANLLDDLREQWLEAEAAELNKRDESALIFDKRLEMLMLVAENEKGDGTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04740			ankyrin repeat family protein ...		Lus10012362 [exp]	0	1
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032871 [exp]	9.5	0.7215
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008527 [exp]	10.1	0.6958
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10012139 [exp]	10.1	0.6659
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10026118 [exp]	11.0	0.6913
AT5G41980			unknown protein		Lus10024452 [exp]	15.2	0.7061
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10021932 [exp]	16.5	0.6779
AT2G31440			unknown protein		Lus10027036 [exp]	32.2	0.6701
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10004772 [exp]	45.1	0.6698
AT1G17820			Putative integral membrane pro...		Lus10038326 [exp]	52.9	0.6560
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10015664 [exp]	56.8	0.6709

Compare expression of checked genes

Lus10012362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.