Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14835 424 / 9e-150 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002131 [exp] 609 / 0 AT2G14835 459 / 1e-163 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G089100 [exp] 499 / 2e-179 AT2G14835 485 / 1e-173 RING/U-box superfamily protein (.1.2) Potri.001G294200 [exp] 489 / 2e-175 AT2G14835 476 / 5e-170 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012365 pacid=23176771 polypeptide=Lus10012365 locus=Lus10012365.g ID=Lus10012365.BGIv1.0 annot-version=v1.0 ATGGTGGTCTGCAAATGCCGGAAGGCTACTAAATTGTATTGTTTCGTACACAAGGTTCCTGTCTGCGGGGAATGCATCTGCTTCCCGGAGCATCAGATAT GCGTGGTTCATACTTACTCAGAGTGGGTTATAGATGGAGGGTATGACTGGCCCCCCAATTGCTGCTCATGCCAAGCTGTGTTAGATGAGGGTTCTGGTGA AACAACTCGATTGGGCTGCATGCATGTGATACACACAAATTGTTTGGTTTCTCATGTTAAAAGTTTTCCTCCACACACTGCACCAGCTGGATACGTCTGC CCTTCTTGTTCAATACCGATATGGCCTCCCAAAAATGTGAAAGACTCAGGATCTCGTTTCCATTCAAAGCTGAAAGAAGCGATTATCCAGGCATGTACTC TTACGGGCATCGAAAAGAATTTGTTTGGAAATCATCCAGTTTCCTTTCCGGCACCACCTCCTGCATTTGCGTCAGATCCATTGGTTTCCATCTCTTCTTC ATCATTGTCGGCAAAAGATGATTCTGGGAAGATTCCTTCTATGATTTCAGTCCCAGACATTGTAGAGGTTGAAAGCCCAAGTTCTGCAGCAAATTATTTG AAAAGTTCTAGTCCTGCTGCTCCTTGGGCCACCACTAGAAAAGGCGGTATCCAAGTTGAGAGGCAAAATTCAGATATGTCATACTATGAAGATGATGAAG ATGGCAATCGTAAAAAGTACAGTCGAAGGGGTCCAATTCAACACAAGTTCCTTAGAGCTTTGCTTCCGTTCTGGTCAAGTGCATTACCAACTTTACCAGT GACTGCTCCTTCCCGCAAAGATGGAACGAATGCTGATGATACCCCGGAAGTCCGTACAAGGCATCACAGATCATCAAGGATGGACCCCAGAAAAATACTT CTCTTCATAGCAATCATGGCGTGTATGGCGACCATGGGAATACTGTACTACAGAATCGCACAGAGTGGATTTGGGGACGAGCCAGGTGATGAGCAGCAGT AA
AA sequence Show only first row Show all	>Lus10012365 pacid=23176771 polypeptide=Lus10012365 locus=Lus10012365.g ID=Lus10012365.BGIv1.0 annot-version=v1.0 MVVCKCRKATKLYCFVHKVPVCGECICFPEHQICVVHTYSEWVIDGGYDWPPNCCSCQAVLDEGSGETTRLGCMHVIHTNCLVSHVKSFPPHTAPAGYVC PSCSIPIWPPKNVKDSGSRFHSKLKEAIIQACTLTGIEKNLFGNHPVSFPAPPPAFASDPLVSISSSSLSAKDDSGKIPSMISVPDIVEVESPSSAANYL KSSSPAAPWATTRKGGIQVERQNSDMSYYEDDEDGNRKKYSRRGPIQHKFLRALLPFWSSALPTLPVTAPSRKDGTNADDTPEVRTRHHRSSRMDPRKIL LFIAIMACMATMGILYYRIAQSGFGDEPGDEQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14835			RING/U-box superfamily protein...		Lus10012365 [exp]	0	1
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10034493 [exp]	1.7	0.9202
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10021094 [exp]	4.5	0.9131
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10020232 [exp]	5.3	0.9158
AT2G36460			Aldolase superfamily protein (...		Lus10023870 [exp]	6.6	0.9326
AT2G16595			Translocon-associated protein ...		Lus10007577 [exp]	7.1	0.9307
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10031492 [exp]	7.3	0.9127
AT2G42520			P-loop containing nucleoside t...		Lus10029337 [exp]	14.5	0.9026
AT1G48900			Signal recognition particle, S...		Lus10016213 [exp]	21.1	0.9008
AT2G16250			Leucine-rich repeat protein ki...		Lus10023570 [exp]	21.6	0.8982
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10042110 [exp]	23.5	0.8940

Compare expression of checked genes

Lus10012365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.