Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19610 172 / 1e-45 Plant protein of unknown function (DUF936) (.1) AT1G08760 152 / 1e-38 Plant protein of unknown function (DUF936) (.1) AT3G14170 142 / 5e-36 Plant protein of unknown function (DUF936) (.1) AT1G70340 132 / 9e-33 Plant protein of unknown function (DUF936) (.1) AT1G23790 124 / 5e-30 Plant protein of unknown function (DUF936) (.1) AT4G13370 125 / 8e-30 Plant protein of unknown function (DUF936) (.1) AT2G31920 90 / 1e-18 Plant protein of unknown function (DUF936) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002129 [exp] 1138 / 0 AT3G19610 260 / 9e-77 Plant protein of unknown function (DUF936) (.1) Lus10026806 [exp] 163 / 4e-42 AT1G08760 732 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10036076 [exp] 162 / 2e-41 AT1G08760 731 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10008138 [exp] 145 / 1e-37 AT3G14170 350 / 8e-117 Plant protein of unknown function (DUF936) (.1) Lus10013177 [exp] 140 / 3e-35 AT3G14170 459 / 9e-158 Plant protein of unknown function (DUF936) (.1) Lus10013007 [exp] 127 / 3e-33 AT1G23790 253 / 6e-82 Plant protein of unknown function (DUF936) (.1) Lus10029158 [exp] 129 / 2e-31 AT1G70340 477 / 2e-164 Plant protein of unknown function (DUF936) (.1) Lus10030870 [exp] 124 / 1e-29 AT1G23790 391 / 6e-131 Plant protein of unknown function (DUF936) (.1) Lus10030619 [exp] 120 / 2e-28 AT1G23790 393 / 5e-132 Plant protein of unknown function (DUF936) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G294600 [exp] 281 / 2e-85 AT3G19610 177 / 2e-47 Plant protein of unknown function (DUF936) (.1) Potri.017G026200 [exp] 156 / 6e-40 AT1G08760 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.007G131600 [exp] 152 / 2e-38 AT1G08760 674 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.003G070200 [exp] 142 / 5e-36 AT3G14170 458 / 2e-157 Plant protein of unknown function (DUF936) (.1) Potri.008G192300 [exp] 130 / 1e-31 AT1G23790 572 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.018G072500 [exp] 120 / 3e-28 AT4G13370 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.009G024800 [exp] 102 / 1e-22 AT2G31920 293 / 1e-91 Plant protein of unknown function (DUF936) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06075 [flax] [poplar] DUF936 Plant protein of unknown function (DUF936)
Representative CDS sequence Show only first row Show all	>Lus10012367 pacid=23176825 polypeptide=Lus10012367 locus=Lus10012367.g ID=Lus10012367.BGIv1.0 annot-version=v1.0 ATGGAGGAATTGGAGTCAGGAGTTCTTGTAAAATTCCTCCAAAGGATGAACGCCCACGGCAAGAAGCTGCGGGATCCAGAGCCCGTCCTTCTACAGATCA GAAGCATCATCCCGGTGCTGAAGAACGGCGAGATTTGGCCGAATCAAGGGTTCTTCCTCAAGATTTCGGATCTGACCCACGCCATGTTCGTTTCTTTGCC TCAAGAACAGGACGAATTGATCTTGGGGAACAAATTGCAGCTTGGCCAGTTCGTATACGTCGAGAAGCTGGAAGCGGCGTACCCAGTCCCGATGATCAAA GGCGTTAAGCCAATACCAGGTAGACACCCTTGTCTAGGTCATCCGAAAGACCTCCTCCCGAGCGAGAATCTCGAAAAATTTCTAGGGGTTTCGAAGTTGG AATCCATATCCGAATGCGGTCAAACCTTGATTACTGCTCCGAAGGTGAGCGTTGACGAAATGAGGGATAGAATCAAGAACTTGAGCTGGTCGATTGATCA GGACAGCAATATTAGGAGCGAAATGACGAAGAAGTCGAGTAATAATAAGGTGAAGAAATCGCGTCCGGGTGCTCCGAAAACCAAGAGTCTGTTGAATTAC AGGCCTAGAGGGATGGATGTGGAGAGCACTTTGAGTTTGAGGGCTAATAGGAAAGATGAAATGTGGTTACTGAAGAACAATTTCGCGAAGTCGAGGAATC CGGATAGGGATAGTGATACTGAGAGTACGATGACTAGCGGCACCAGCAGGAAGAGCTGGAGTAATTATCACAACGATGGTGAAGTTGTGAGAATGGTGGA CAATGCCGATATTCCAGTGCCTCGAGCTACTCATTCTTGTAATTCTTCAATTCAGTCGTCTAGAAATGACAGCTCTGATGACAATTTAAGCTGCAAAACC AAGAGGAGACTAACCAGTGTGTCTACAAGATCGTCGAGATCAGTAAGCAAGAATAATGTAGCCGTTTTGCCCTTGTCGAGGAGAATGAGTGAAGATTTCT GTAATCAGAAAGTGATTCCTAGCTCAACGAGTGATAAGAGTTCAGAGGATAACAACAACAACAACAGGTCTTCCTGGGATTATCTTCCTTCTACCTTGGT GAAAATTGGACAGGATGTACTGAGGCAGAGAGACATTGCTCTTTCTACTGCTGTAGAGGCTTTACAGGAGGCTTCTGCTGCTGAGAGATTGCTCAAATGC CTAAGCATATATTCTGAGCTGCAAGCAGCAGAAGTGGACGACCAGCATCTAGCGATCGATAAGTTCTTCAGGCTTCAGGAGAATCTGACTCAAGCGCAGC AGATATTTCGATCACTAACAACTGTCACACCACCTATAACATCAGCCAACGAGCAAAGCAACCCTCATTTTGCGATGGAGGGACTTAAGCTCGCAATCGA CAGGAGGCAGAACGCATTCTCGTGGATAAAAGAAGCTTTAGCATCTGACCTCAGCCCAGTTTCGACACACACCAAGGCGGGAACTATTAATTCCTCGGAT GGCAGCCTGGAAGCCAGAAAGTCTCAGAAATCAGGGCATAAGAGCCAGAAACCGAAGGGTATAGTGGTAATTCGAAAGCAGAACAGCAGTGGAGATCATA TGGAGTTCGAGATGGCGCATAATGTAAATAACGGCCAGCAGCAGTCGAGCTGGATCAAGGGGAGTGCATTGCCGGTTTCGATGGAACTCGCTAACTCCCT GAGCGAGGAGTGTAGGACTTGGTTCTTTACTTACATAGAGGACTATTTGGAATGGGTTGGTAGAAGGATTGTGTCTGAAGATGAATCTGATGGCCAAGCT ACTGAAATGATGTACCAGATAAAGAGAGTGAATGACTTCTTGGACAGGAGATGCTTGCAGGATGGATCGGGGTTGAAAGATTGCGAATCGGAAGCTTGTG GGAGAATTAGGAACAAGATCTGTGGGATTCTTCTGAAACATGTTGAGAAAACTTCCATGTCTGAGCATTGGCAGTAA
AA sequence Show only first row Show all	>Lus10012367 pacid=23176825 polypeptide=Lus10012367 locus=Lus10012367.g ID=Lus10012367.BGIv1.0 annot-version=v1.0 MEELESGVLVKFLQRMNAHGKKLRDPEPVLLQIRSIIPVLKNGEIWPNQGFFLKISDLTHAMFVSLPQEQDELILGNKLQLGQFVYVEKLEAAYPVPMIK GVKPIPGRHPCLGHPKDLLPSENLEKFLGVSKLESISECGQTLITAPKVSVDEMRDRIKNLSWSIDQDSNIRSEMTKKSSNNKVKKSRPGAPKTKSLLNY RPRGMDVESTLSLRANRKDEMWLLKNNFAKSRNPDRDSDTESTMTSGTSRKSWSNYHNDGEVVRMVDNADIPVPRATHSCNSSIQSSRNDSSDDNLSCKT KRRLTSVSTRSSRSVSKNNVAVLPLSRRMSEDFCNQKVIPSSTSDKSSEDNNNNNRSSWDYLPSTLVKIGQDVLRQRDIALSTAVEALQEASAAERLLKC LSIYSELQAAEVDDQHLAIDKFFRLQENLTQAQQIFRSLTTVTPPITSANEQSNPHFAMEGLKLAIDRRQNAFSWIKEALASDLSPVSTHTKAGTINSSD GSLEARKSQKSGHKSQKPKGIVVIRKQNSSGDHMEFEMAHNVNNGQQQSSWIKGSALPVSMELANSLSEECRTWFFTYIEDYLEWVGRRIVSEDESDGQA TEMMYQIKRVNDFLDRRCLQDGSGLKDCESEACGRIRNKICGILLKHVEKTSMSEHWQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19610			Plant protein of unknown funct...		Lus10012367 [exp]	0	1
					Lus10027773 [exp]	2.8	0.8138
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10018158 [exp]	3.9	0.8161
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10021233 [exp]	21.7	0.7711
AT4G28380			Leucine-rich repeat (LRR) fami...		Lus10017713 [exp]	24.9	0.7686
					Lus10034954 [exp]	29.2	0.7247
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	29.2	0.7662
					Lus10001533 [exp]	32.4	0.7533
AT1G71820		SEC6	SEC6 (.1.2)		Lus10036425 [exp]	35.9	0.6148
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10023335 [exp]	39.0	0.7501
AT1G56140			Leucine-rich repeat transmembr...		Lus10031777 [exp]	42.8	0.7451

Compare expression of checked genes

Lus10012367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.