Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 106 / 2e-28 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 105 / 3e-28 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 102 / 4e-27 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 102 / 1e-26 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 48 / 7e-07 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 43 / 4e-05 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023962 [exp] 197 / 8e-64 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 192 / 1e-61 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 191 / 1e-61 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025122 [exp] 189 / 1e-60 AT4G35210 214 / 3e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023963 [exp] 185 / 1e-60 AT2G17080 139 / 6e-42 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 188 / 2e-60 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025125 [exp] 187 / 8e-60 AT2G17080 219 / 4e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 187 / 8e-60 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014449 [exp] 186 / 2e-59 AT2G17080 213 / 6e-69 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142700 [exp] 108 / 7e-29 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 107 / 1e-28 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 99 / 3e-25 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 96 / 3e-24 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 95 / 7e-24 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 95 / 7e-24 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 95 / 8e-24 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 93 / 5e-23 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 83 / 2e-19 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248975 [exp] 80 / 3e-18 AT2G17080 164 / 2e-49 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10012368 pacid=23176770 polypeptide=Lus10012368 locus=Lus10012368.g ID=Lus10012368.BGIv1.0 annot-version=v1.0 ATGGCAGCCACCACCTTCCACTTTCGATCCAACAGTTTCCCATCAAGGTCTCACCCTCTAGTTTCGGAGTTCGACGATCAACTTTGCAGGTTGACACAAT CTCAAGCTGCCTCCACATCATCATCATCCATAAGCAACAGGCTTAATGGCCTTCAAGATGTTTATGACTGTGTTGACAAGTTAATTCAACTTCCATCAAC TCGACAAGCCATGATCCATGACCAGAATGAGCTATTAGATGGATCTCTGAGACTGTTGGATCTGTGCAACACAGCCAGGGATGCCTTGTCCCAAATGAAA GAGTCGGTTTCTGAACATCAATCCGTCATTCGCAGAAGGCAAGGAGACTTGGTAGCAGAAACCAAGAGATATCTTAACTCAAGGAAGGCTGTGAAGAAAA AGGCCTTGAAGGCTATTGAAACGAAGAAATCTGAGACGGTTACCATGTCGGAAGAATCTGAGTCCATTGTTGTGGAAGGTTTGGGAAGCTTGTTGTCTTT TCATCCATTCGTTATCCATATCGTAAAATTACAGTGA
AA sequence Show only first row Show all	>Lus10012368 pacid=23176770 polypeptide=Lus10012368 locus=Lus10012368.g ID=Lus10012368.BGIv1.0 annot-version=v1.0 MAATTFHFRSNSFPSRSHPLVSEFDDQLCRLTQSQAASTSSSSISNRLNGLQDVYDCVDKLIQLPSTRQAMIHDQNELLDGSLRLLDLCNTARDALSQMK ESVSEHQSVIRRRQGDLVAETKRYLNSRKAVKKKALKAIETKKSETVTMSEESESIVVEGLGSLLSFHPFVIHIVKLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10012368 [exp]	0	1
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10024263 [exp]	2.4	0.9368
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10036465 [exp]	2.8	0.8936
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10014163 [exp]	2.8	0.9362
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10017861 [exp]	4.5	0.8923
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10041446 [exp]	4.6	0.9075
AT5G39670			Calcium-binding EF-hand family...		Lus10042369 [exp]	8.8	0.8913
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10006842 [exp]	11.0	0.8386
AT1G53400			Ubiquitin domain-containing pr...		Lus10029264 [exp]	12.0	0.8566
AT5G17680			disease resistance protein (TI...		Lus10010221 [exp]	12.1	0.8908
AT4G11170			Disease resistance protein (TI...		Lus10010222 [exp]	12.5	0.8733

Compare expression of checked genes

Lus10012368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.