Plant FIBer expression Database

Lus10012370 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G03250 318 / 2e-110 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028017
[exp]
508 / 0 AT1G03250 316 / 1e-106 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G046400
[exp]
332 / 4e-116 AT1G03250 318 / 8e-111 unknown protein
PFAM info
Representative CDS sequence
>Lus10012370 pacid=23176759 polypeptide=Lus10012370 locus=Lus10012370.g ID=Lus10012370.BGIv1.0 annot-version=v1.0
ATGGCGACACCCGACATCATTCAGCTCATCGACGAACGCCTCCTCTCTTCGCCTCTCTACGATCCTTCCAAAGCTGATGGTGGGAAGTACCGTGGATTGT
CAATTGAGAAGAAGATCGAGTTCCTCGAGAACTTGACTGGCAAAGTTACCAACCGAAGGTCTCGAAGATGGATTAATGATCGCCTTTTGATGGAGCTTGT
TCCGCGCCTCAATGCTAATGAGATCAAAGGCCTGTTTGCTCCACCACCTTGGGGTGATGCTGTACCACCCTCTGCATTTTCCATGACCAACATGGGAGAG
TGGGAGAAATTTAGGAATATAGATATGGACAAACAGGCTAATATACTAGACACCTTTGATGATAAGCCTTCACCGAGAAGGAAAGGATCCATCGATGCTG
ATAAGATGTCTGCCTTAAACGCCTGGCGAAGAATAGATGCCAGCACCAGAGAAGCTCTCCGTCGCAGCTTTCTTACTGAACTTATCGATGGCTATGAGGT
ATGCGTACGAGCCTTCATTCAAGAGGATGTAAATGGTGAAGTTCTTACAATAAGGGTTCAAGATCCATTCCACAGACTGTTGCTTCATGGTGTCTGTGAG
TTCTACAACTTGGAATCGGTGACCATGTCGGAGACGAAAGGCGGGGAGGAGCTGAAGATGACTAAAATAAACAGAAAGAAGAAGAGAGTCGCTGATGAGC
TCCCAAACATCACATTGTCAGGTTTCCTGAAAATGACCAAAGAAGGTGTCTGGTAA
AA sequence
>Lus10012370 pacid=23176759 polypeptide=Lus10012370 locus=Lus10012370.g ID=Lus10012370.BGIv1.0 annot-version=v1.0
MATPDIIQLIDERLLSSPLYDPSKADGGKYRGLSIEKKIEFLENLTGKVTNRRSRRWINDRLLMELVPRLNANEIKGLFAPPPWGDAVPPSAFSMTNMGE
WEKFRNIDMDKQANILDTFDDKPSPRRKGSIDADKMSALNAWRRIDASTREALRRSFLTELIDGYEVCVRAFIQEDVNGEVLTIRVQDPFHRLLLHGVCE
FYNLESVTMSETKGGEELKMTKINRKKKRVADELPNITLSGFLKMTKEGVW

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G03250 unknown protein Lus10012370
[exp]
0 1
AT1G33780 Protein of unknown function (D... Lus10001286
[exp]
1.0 0.9220
AT1G75380 ATBBD1 bifunctional nuclease in basal... Lus10024277
[exp]
2.4 0.9000
AT3G45310 Cysteine proteinases superfami... Lus10033428
[exp]
4.5 0.9172
AT4G21470 ATFMN/FHY riboflavin kinase/FMN hydrolas... Lus10018906
[exp]
5.0 0.8875
AT4G13700 ATPAP23, PAP23 purple acid phosphatase 23 (.1... Lus10028533
[exp]
5.1 0.8709
AT4G21470 ATFMN/FHY riboflavin kinase/FMN hydrolas... Lus10028605
[exp]
5.3 0.8704
AT1G50440 RING/FYVE/PHD zinc finger supe... Lus10034832
[exp]
7.4 0.8805
AT5G01800 saposin B domain-containing pr... Lus10022750
[exp]
8.5 0.8821
AT1G04555 unknown protein Lus10023715
[exp]
8.9 0.8951
AT1G77930 Chaperone DnaJ-domain superfam... Lus10001296
[exp]
9.5 0.8851

Lus10012370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.