Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03260 235 / 4e-77 SNARE associated Golgi protein family (.1) AT5G19070 214 / 4e-69 SNARE associated Golgi protein family (.1) AT1G22850 59 / 9e-10 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028016 [exp] 322 / 5e-111 AT1G03260 328 / 2e-113 SNARE associated Golgi protein family (.1) Lus10034028 [exp] 221 / 2e-71 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1) Lus10004421 [exp] 218 / 5e-70 AT5G19070 361 / 2e-126 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 202 / 1e-64 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1) Lus10041229 [exp] 90 / 5e-20 AT3G23590 1595 / 0.0 REF4-related 1 (.1) Lus10041062 [exp] 54 / 3e-08 AT1G22850 377 / 2e-131 SNARE associated Golgi protein family (.1) Lus10006162 [exp] 54 / 5e-08 AT1G22850 394 / 2e-137 SNARE associated Golgi protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G030800 [exp] 234 / 8e-77 AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1) Potri.008G202600 [exp] 225 / 2e-73 AT5G19070 338 / 1e-117 SNARE associated Golgi protein family (.1) Potri.013G099600 [exp] 60 / 3e-10 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1) Potri.019G071900 [exp] 59 / 5e-10 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10012371 pacid=23176744 polypeptide=Lus10012371 locus=Lus10012371.g ID=Lus10012371.BGIv1.0 annot-version=v1.0 ATGATTCATTTCGTGGCGTTTGCAGAAGTTGGAGGACCTCCTTCTATGGATAAAAGAGGATCTTGGTCCTTGGGGGTTCTCGTGTACATTCCTCTAACAA TTCTAGCAGTTCCTGCTTCTGTTCTCACTCTTGGTGGCGGTTACCTTTTTGGTCTTCCGGTAGGATTTATTGCAGATACCATTGGTGCCACGTTAGGTGC AACTGCTGCTTTCCTTGTCGGTAGAACAGTTGGAAGGCCATACATCATTTCCAAGTTAAAGAACTATCCTAAGTTTCAAGCCGTCAACATAGCAGTTGAG AGATCTGGCTTCAAGATAGTTTTGCTCCTTCGGCTTGTTCCCTTACTTCCATTTAACGTCCTGAATTACCTCCTGTCTGTGACTCCTGTTCATGTAGGGG ACTTCATGCTGGCATCTATGCTTGGGGTGATGGGAATGACAGTTTGTATTTCTTCATCCATCTTTGAGGAATACCAATATTATATGCCTCAGACAATGCC GATCACATTTGCACTAGTCTATGTTGGGACAACTCTGAAAGACCTTTCGGCTATTACACACGGATGGCATGAAGCCTCAAAGCAGCGCTGGGTGTTCATG CTGATGGGGTTTGCAGTATCCGGTGCTCTCTTCTTCATGATTGTTAGAATTGCCAAGACTTCTCTGGAGAAAGCGCTGGCCGAAAACGGTGGCTTGGAAG CTACAGAAATGCTACCAGTAGTGGCGGATATTACGACGACTTCATCACTGCCTCTTGTAATTACGATCGATCCGGCAGGAGGGTGA
AA sequence Show only first row Show all	>Lus10012371 pacid=23176744 polypeptide=Lus10012371 locus=Lus10012371.g ID=Lus10012371.BGIv1.0 annot-version=v1.0 MIHFVAFAEVGGPPSMDKRGSWSLGVLVYIPLTILAVPASVLTLGGGYLFGLPVGFIADTIGATLGATAAFLVGRTVGRPYIISKLKNYPKFQAVNIAVE RSGFKIVLLLRLVPLLPFNVLNYLLSVTPVHVGDFMLASMLGVMGMTVCISSSIFEEYQYYMPQTMPITFALVYVGTTLKDLSAITHGWHEASKQRWVFM LMGFAVSGALFFMIVRIAKTSLEKALAENGGLEATEMLPVVADITTTSSLPLVITIDPAGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03260			SNARE associated Golgi protein...		Lus10012371 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10000738 [exp]	3.9	0.7990
AT3G19340			Protein of unknown function (D...		Lus10035127 [exp]	4.0	0.8499
AT3G24530			AAA-type ATPase family protein...		Lus10023642 [exp]	5.7	0.7885
AT2G41790			Insulinase (Peptidase family M...		Lus10018071 [exp]	16.0	0.7777
					Lus10035158 [exp]	19.5	0.7999
					Lus10023092 [exp]	22.0	0.7627
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10009430 [exp]	24.5	0.7831
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10038354 [exp]	24.8	0.7849
AT1G05170			Galactosyltransferase family p...		Lus10002079 [exp]	25.0	0.7744
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10017638 [exp]	29.1	0.6876

Compare expression of checked genes

Lus10012371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.