Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63095 76 / 6e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028014 [exp] 236 / 1e-77 AT3G63095 77 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029648 [exp] 83 / 4e-18 AT3G63095 87 / 1e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028013 [exp] 75 / 8e-16 AT3G63095 37 / 0.009 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012374 [exp] 74 / 1e-14 AT3G63090 503 / 8e-176 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G215200 [exp] 76 / 4e-17 AT3G63095 69 / 1e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G139100 [exp] 76 / 7e-17 AT3G63095 76 / 4e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G139200 [exp] 75 / 1e-16 AT3G63095 69 / 2e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G022700 [exp] 71 / 3e-15 AT3G63095 68 / 2e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012373 pacid=23176781 polypeptide=Lus10012373 locus=Lus10012373.g ID=Lus10012373.BGIv1.0 annot-version=v1.0 ATGATGAAACCTCATGTGTTGTTACTCCTCTTAACTTGTGCATCACTTCTAACAACTCTTTCCTTCTCCTCCGATCCGGTCCCTAATCTCCGACGGCCTT CCCCCTTTCGCCCTTTGTGCGTCTCCCAGATCGCGCTCGCCAACTATGCATGCACAAGCGTTGTTCCTGGTCTCCCCTTCGGTAATAGCCCAACCGTTCC TTCTGCCATCGGTACTATGCCCGAGCCATATGAAATCCTCTATTCGGATGCCAGGCAGGAGGACGACAACGACAATGACGATGGCGAGTCCAATGGAGGA GGGGAAGATGGACAGATAGAAAGAGGCAGCGGAGGCGGAGACAGTGGGAGTAGCGGAAGTGGTACTCAGAGACACCGCCGCCATCCTCATCCTCATCCTC ATCCTCGTCGTGAGCATGAAAATGCTCACGGCGACGGGGATGGGCACAACAGTGGTACTACTACTTCTACTCCTAGACATCACCATCGGAGCAGTGCAGG ACATGGGGGGCATCGCCGTCATGGCCACAGGAGCACTAGCCCTGGCGGGCACGATGGTGATGATGATAATGACCGTAATAACGATGACGAGGGTGATGAT GATGAGGATGATGACGAGGACAACAGGGAGTTGCCACCTATGTCGCCGGCGGAGAACAACTGTTGCAAGTGGGTTAGGGATGTCGATGATGAATGTGTGT GTGAGTTGCTGATGAGGTTGCCAACTTTCTTAGCTAGGCCGTTCCATGAGTACACCATTACGGTTAGTGAGTGGTGCAAAGTTACTTACTCTTGTGGCGG AAGGCCTAGACCTTGA
AA sequence Show only first row Show all	>Lus10012373 pacid=23176781 polypeptide=Lus10012373 locus=Lus10012373.g ID=Lus10012373.BGIv1.0 annot-version=v1.0 MMKPHVLLLLLTCASLLTTLSFSSDPVPNLRRPSPFRPLCVSQIALANYACTSVVPGLPFGNSPTVPSAIGTMPEPYEILYSDARQEDDNDNDDGESNGG GEDGQIERGSGGGDSGSSGSGTQRHRRHPHPHPHPRREHENAHGDGDGHNSGTTTSTPRHHHRSSAGHGGHRRHGHRSTSPGGHDGDDDNDRNNDDEGDD DEDDDEDNRELPPMSPAENNCCKWVRDVDDECVCELLMRLPTFLARPFHEYTITVSEWCKVTYSCGGRPRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63095			Tetratricopeptide repeat (TPR)...		Lus10012373 [exp]	0	1
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10029992 [exp]	12.8	0.6716
AT5G18960	FAR1_related	FRS12	FAR1-related sequence 12 (.1)		Lus10023137 [exp]	36.0	0.6209
AT3G20750	GATA	GATA29	GATA transcription factor 29 (...		Lus10042504 [exp]	80.9	0.5833
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10018133 [exp]	82.8	0.5540
AT4G21620			glycine-rich protein (.1.2)		Lus10018454 [exp]	121.2	0.5478
AT3G13440			S-adenosyl-L-methionine-depend...		Lus10008072 [exp]	148.9	0.4967
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Lus10030348 [exp]	152.9	0.5238

Compare expression of checked genes

Lus10012373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.