Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63090 491 / 2e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 166 / 1e-45 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G01037 152 / 6e-40 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 147 / 1e-38 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 137 / 2e-35 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G21970 136 / 1e-34 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G33495 129 / 3e-32 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G79120 118 / 1e-28 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 115 / 2e-27 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 114 / 2e-27 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000096 [exp] 659 / 0 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 652 / 0 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10028011 [exp] 383 / 7e-132 AT3G63090 261 / 6e-87 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10028012 [exp] 197 / 2e-60 AT3G63090 234 / 7e-77 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10028013 [exp] 191 / 5e-57 AT3G63095 37 / 0.009 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003062 [exp] 176 / 4e-49 AT2G31290 558 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10034086 [exp] 172 / 7e-48 AT2G31290 559 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10015979 [exp] 142 / 6e-37 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10029446 [exp] 144 / 9e-37 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G220000 [exp] 506 / 4e-177 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 171 / 2e-47 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G169300 [exp] 152 / 1e-39 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 150 / 3e-39 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 140 / 6e-36 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.006G218100 [exp] 134 / 1e-33 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 125 / 3e-31 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.015G141700 [exp] 125 / 1e-30 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 118 / 1e-28 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.013G115500 [exp] 119 / 4e-28 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10012374 pacid=23176749 polypeptide=Lus10012374 locus=Lus10012374.g ID=Lus10012374.BGIv1.0 annot-version=v1.0 ATGGCCATTTCTGGACCGTCGATCGCAAGCAGCTATTTCCCACAAGAAAAGGACGGTCAAAGATATGGGGCCACGGAGCTGGACTGGAGACCGACATCTA TCAGCCTATCAGGTATGCTATTCCAATCACGACCCATTGTCAATTTCGTTCGCGATTCGCTCGTGAACCCTAGATTGGGTATCCAAATCAAGCACATTTC CAGCCTCAAGGTCGTATGGCGGAAGGATCCGAAGCTAGACGAAGCGATCGAGCGAGACAAGAGGTACAAGCTATGCGCGCGCGTCGTCAGGGAGGTGCTG AACGAACCTGGTCAGGTAATCTGCTTATCCTATCTTGATAAAAGGCGTCAGAGGTTGCGTCTCATGGACAAGATCAAAACTTTCCTCCTTCGGAACCCGT TACTGTTCGATACTTACTACGATCGGGTGAAACCTAAATCGGAACCCGTCCCGTTCGTTCGACCCAGTGATAGGCTGAGGGCGTTTTTGGAAGAGGAGAA TAGGATACAGCTTGAGAACGAAGGGTTGGTAGTTTCGAAGCTGTGTAAGTTGTTGATGATGGCAAAAGATAAGGTGATCAGCGCTGATAAGTTGGTTCAT GTTAAAAGGGAATTCGGGTTTCCTGATGATTTTATGGTTAGTTTGGTTCCGAAATATCCGAATTACTTCAGGCTGGTTGGGTTTCCAGGAGAAGGGAAGT CGTTTCTGGAGCTTGTGGATTGGAACCCTGAGTTTGCCAAATCTGTCATTGAGCGGAGAGCAGAAGAGGAGTCTAGGTCAATAGGGGTCAGTGTTCGTCC TAATTTTGATTGCAAGCTTCCACCGGGGTTTATCCTGAGGAAGGAGATGAGGGAGTGGGTTAGGGATTGGTTGGAACTCGAGTACGTATCGCCTTATGTC GATGTATCACCTTTGGATCAATCTTCACCCGAAATGGAGAAAAGATCCGTGGCAGTTTTCCACGAGCTGCTATCGCTCTCGCTGTTGAAGAGGGTTCCGG TGGCGATTCTAGGGAAGTTCTGTGAAGAGTATAGGTTTTCGAATGCATTCTCCAGCGTTTTCACCAGGCATTCTGGGATATTTTACATGTCGTTGAAAGG TGGCATCAAGAGTGCGATGCTAAGGGAAGCGTATAATGAAATGGCTATTTATGTCAAGCAACTTTGGAATGAATCGTGGGGGCATCATCTTGAAGCCATT CTAGTGTCCAAGACAGATGCACAGAGTCACAGACCTCCACTCTGCCATTCACAGTTCTCACTTGCCAACTACGCCTGCTCGCACTTGCCATTCATCGAAC TCCCACACGCTGCCGCTGTCAATCCTCCTTCTCCACCGACATCTCCAGCCACTTCACTTGTCGACCTTGCTGCTAATCACGGCATGGGGGCCACAGGGAC GGGGCATGATGAAGATGATAATGAGCATAACGGGGGGCACCACAGGGACGGGGGGCACCACAGGGACGGGGGCCACCACAGGGACGGGGGCCACCACAGG CACGGGGGGCACCACAGACACGGACTAGGGCAGGAGCATCACCACCATCATAATTCGGTGACAACTGCAGAAGACAACTGCTGCATGTGGCTAACCCGGA TGGATTCAGAATGTGTATGTGACGTGTTGGTTCGATTGCCACCGTTTCTCGCGAAACCTTCTCATACGTATACCGTCTATGTCAACGATGCATGTGTTGT TACCTTCGAATGCTCGGGCCGGATAGTGCCTTGA
AA sequence Show only first row Show all	>Lus10012374 pacid=23176749 polypeptide=Lus10012374 locus=Lus10012374.g ID=Lus10012374.BGIv1.0 annot-version=v1.0 MAISGPSIASSYFPQEKDGQRYGATELDWRPTSISLSGMLFQSRPIVNFVRDSLVNPRLGIQIKHISSLKVVWRKDPKLDEAIERDKRYKLCARVVREVL NEPGQVICLSYLDKRRQRLRLMDKIKTFLLRNPLLFDTYYDRVKPKSEPVPFVRPSDRLRAFLEEENRIQLENEGLVVSKLCKLLMMAKDKVISADKLVH VKREFGFPDDFMVSLVPKYPNYFRLVGFPGEGKSFLELVDWNPEFAKSVIERRAEEESRSIGVSVRPNFDCKLPPGFILRKEMREWVRDWLELEYVSPYV DVSPLDQSSPEMEKRSVAVFHELLSLSLLKRVPVAILGKFCEEYRFSNAFSSVFTRHSGIFYMSLKGGIKSAMLREAYNEMAIYVKQLWNESWGHHLEAI LVSKTDAQSHRPPLCHSQFSLANYACSHLPFIELPHAAAVNPPSPPTSPATSLVDLAANHGMGATGTGHDEDDNEHNGGHHRDGGHHRDGGHHRDGGHHR HGGHHRHGLGQEHHHHHNSVTTAEDNCCMWLTRMDSECVCDVLVRLPPFLAKPSHTYTVYVNDACVVTFECSGRIVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10012374 [exp]	0	1
AT4G10620			P-loop containing nucleoside t...		Lus10000122 [exp]	1.0	0.7990
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10038377 [exp]	2.4	0.7857
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10012206 [exp]	2.8	0.7745
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10000096 [exp]	6.5	0.6827
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10022670 [exp]	8.4	0.7520
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10037505 [exp]	10.6	0.7305
AT1G57540			unknown protein		Lus10029982 [exp]	11.0	0.6979
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	11.8	0.7199
AT5G25752		ATRBL11	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10022131 [exp]	12.0	0.7153
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10030677 [exp]	12.0	0.6875

Compare expression of checked genes

Lus10012374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.