Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03270 564 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14240 554 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) AT4G14230 535 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 375 / 7e-127 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT2G14520 369 / 2e-124 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT5G52790 362 / 1e-120 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G47330 340 / 9e-112 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G55930 58 / 8e-09 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT3G13070 58 / 9e-09 CBS domain-containing protein / transporter associated domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028010 [exp] 789 / 0 AT1G03270 635 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10034024 [exp] 584 / 0 AT4G14230 675 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10004429 [exp] 567 / 0 AT4G14230 654 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10005259 [exp] 384 / 5e-130 AT2G14520 679 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10027528 [exp] 370 / 8e-124 AT5G52790 560 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039289 [exp] 370 / 1e-123 AT5G52790 557 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10032715 [exp] 358 / 4e-119 AT1G47330 646 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 327 / 6e-110 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012476 [exp] 330 / 1e-108 AT2G14520 591 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202100 [exp] 619 / 0 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.010G030200 [exp] 592 / 0 AT4G14240 611 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.009G082300 [exp] 384 / 2e-130 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G288000 [exp] 373 / 1e-125 AT2G14520 620 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 372 / 1e-125 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.017G147900 [exp] 372 / 5e-124 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G196900 [exp] 343 / 2e-112 AT1G47330 575 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G362100 [exp] 57 / 3e-08 AT1G55930 858 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1) Potri.002G260401 [exp] 47 / 8e-07 AT1G47330 58 / 3e-11 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01595 [flax] [poplar] DUF21 Cyclin M transmembrane N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012375 pacid=23176764 polypeptide=Lus10012375 locus=Lus10012375.g ID=Lus10012375.BGIv1.0 annot-version=v1.0 ATGTTGGCGGTGAACGCCGTAAACCTAGCCAGAGCGATGTTCAGATTAAACCACATCATCGTCGAGCCCGATGACATGGAATTCGGCACCGCCTGGTGGT TCGTCTACGCCGGCGTCTCCTGCCTCCTCGTCCTGTTCGCCGGAATCATGTCCGGACTCACCTTGGGCTTGATGTCGCTCGGCCTCGTCGACCTCGAGAT TCTCCAGCGCAGCGGCTCCCTCACTGAGAAGAAGCAAGCTGCTGCGATTCTGCCAGTTGTGCAGAAGCAACACCAGCTGCTGGTGACGCTGCTGCTTTGC AATGCTTGTGCGATGGAGGCGCTTCCGATATACCTTGACAAGATTTTCACTCCGTTGATTGCTGTTCTGCTCTCCGTTACGTTTATTCTCGCCTTTGGAG AGATCATTCCTCAAGCAGTGTGTTCGAGGTATGGACTTGCTGTTGGTGCTAATTTCGTGTGGTTGGTGCGCATTTTGATGATCATTTGCTATCCCATCGC CTACCCGATTGCAAAGGTTTTGGATGTTCTACTTGGACACAATGACTCCTTATTCAGACGAGCCCAGCTCAAAGCCCTTGTCTCTATCCACAGCCAAGAG GCGGGAAAGGGAGGTGAACTCACACATGATGAGACGACAATCATTAGTGGAGCACTTGATTTGACAGAAAAGACGGCAGAGGAAGCTATGACTCCCATAG AATCAACATTTTCCCTGGATGTCAGGTCCAAATTAGATTGGGAAGCAGTAGGCAAAATTCTTGCACGTGGTCACAGTCGTGTTCCGATATATTCAGAAAG TCCAAAGAACATCATTGGTCTTCTATTGGTAAAGAGCCTTCTTACTGTTCGTCCTGAAACTGAAACTCCAGTTAGCTCAGTCTCCATCCGGCGAATGCCT AGGGTTCCATCAGATATGCCTTTGTATGATATCCTTAACGAGTTTCAGCAGGGAAGTAGCCATATGGCAGCTGTGGTAAAGGTCAAGGGCAAGAGCAAGA CTCTGAAATCTGCACCTGATGTAGAAGTACTCCAGGAAGGCAAATTTGGAAACTCCATCTCCAAGTTATGTACACCTTTGCTAACCAAGCAAGATAAATC GGAGAATGTCGTCATCGCAGTTGAAAAGACTTCAAGGCACACCACAAACAAGAAAACTTCGTTGTTTGATGGCATCGGAACAAACAACGTTCCGGAGGAT ATCGAAGAAGGGGAAGTCATCGGTATCATTACACTTGAGGACGTGTTTGAAGAATTGCTCCAAGAAGAAATTGTGGACGAGACTGATGAGTACATTGACG TTCATAGAAGAATACGCGTAGCTGCAGCAGCAGCAGCTTCATCGGTGGCACGAGCTCCACCGGTTCGGAGGGTGACTGGTAAAAAACCAGCTGGAGGTCA AGGTAGGCAGCAAGGGCAACATCCAAAGAAGAAGAGCGGAGGATGA
AA sequence Show only first row Show all	>Lus10012375 pacid=23176764 polypeptide=Lus10012375 locus=Lus10012375.g ID=Lus10012375.BGIv1.0 annot-version=v1.0 MLAVNAVNLARAMFRLNHIIVEPDDMEFGTAWWFVYAGVSCLLVLFAGIMSGLTLGLMSLGLVDLEILQRSGSLTEKKQAAAILPVVQKQHQLLVTLLLC NACAMEALPIYLDKIFTPLIAVLLSVTFILAFGEIIPQAVCSRYGLAVGANFVWLVRILMIICYPIAYPIAKVLDVLLGHNDSLFRRAQLKALVSIHSQE AGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVRSKLDWEAVGKILARGHSRVPIYSESPKNIIGLLLVKSLLTVRPETETPVSSVSIRRMP RVPSDMPLYDILNEFQQGSSHMAAVVKVKGKSKTLKSAPDVEVLQEGKFGNSISKLCTPLLTKQDKSENVVIAVEKTSRHTTNKKTSLFDGIGTNNVPED IEEGEVIGIITLEDVFEELLQEEIVDETDEYIDVHRRIRVAAAAAASSVARAPPVRRVTGKKPAGGQGRQQGQHPKKKSGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03270			CBS domain-containing protein ...		Lus10012375 [exp]	0	1
AT1G50510			indigoidine synthase A family ...		Lus10009716 [exp]	4.9	0.9128
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Lus10021846 [exp]	9.3	0.9053
AT2G39710			Eukaryotic aspartyl protease f...		Lus10004713 [exp]	17.3	0.8926
AT4G33740			unknown protein		Lus10020507 [exp]	21.2	0.8994
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	21.2	0.9039
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	21.5	0.8995
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016890 [exp]	22.5	0.8659
AT5G07360			Amidase family protein (.1.2)		Lus10032519 [exp]	23.8	0.8920
AT1G03280			Transcription factor TFIIE, al...		Lus10011554 [exp]	24.5	0.8779
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	28.9	0.8939

Compare expression of checked genes

Lus10012375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.