Plant FIBer expression Database

Lus10012376 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G46620 60 / 4e-11 zinc finger (C3HC4-type RING finger) family protein (.1)
AT5G59550 58 / 3e-10 zinc finger (C3HC4-type RING finger) family protein (.1)
AT2G29840 57 / 5e-10 RING/U-box superfamily protein (.1)
AT5G60820 56 / 1e-09 RING/U-box superfamily protein (.1)
AT1G18770 53 / 1e-09 RING/U-box superfamily protein (.1)
AT1G60360 55 / 2e-09 RING/U-box superfamily protein (.1)
AT4G12140 54 / 2e-09 RING/U-box superfamily protein (.1)
AT3G02340 55 / 3e-09 RING/U-box superfamily protein (.1)
AT1G18760 54 / 3e-09 Zinc finger, C3HC4 type (RING finger) family protein (.1)
AT4G05350 53 / 4e-09 RING/U-box superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028009
[exp]
248 / 9e-86 AT5G59550 57 / 5e-10 zinc finger (C3HC4-type RING finger) family protein (.1)
Lus10006279
[exp]
110 / 2e-30 AT1G18760 62 / 2e-11 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Lus10034793
[exp]
94 / 8e-25 AT5G59550 48 / 9e-07 zinc finger (C3HC4-type RING finger) family protein (.1)
Lus10020558
[exp]
93 / 1e-24 AT1G18760 56 / 1e-10 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Lus10007628
[exp]
90 / 6e-22 AT4G12140 60 / 2e-10 RING/U-box superfamily protein (.1)
Lus10017722
[exp]
72 / 5e-16 AT3G19950 64 / 5e-12 RING/U-box superfamily protein (.1)
Lus10033682
[exp]
69 / 8e-15 AT3G19950 67 / 5e-13 RING/U-box superfamily protein (.1)
Lus10028017
[exp]
64 / 2e-12 AT1G03250 316 / 1e-106 unknown protein
Lus10025671
[exp]
61 / 2e-11 AT3G13228 74 / 4e-15 RING/U-box superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G118000
[exp]
59 / 6e-11 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Potri.005G062400
[exp]
58 / 1e-10 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1)
Potri.019G086601
[exp]
57 / 2e-10 AT1G14200 60 / 3e-11 RING/U-box superfamily protein (.1)
Potri.007G107000
[exp]
56 / 4e-10 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Potri.004G122000
[exp]
54 / 1e-09 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1)
Potri.002G085800
[exp]
54 / 4e-09 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1)
Potri.005G090500
[exp]
54 / 5e-09 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1)
Potri.007G074014
[exp]
53 / 1e-08 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1)
Potri.010G168300
[exp]
52 / 1e-08 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1)
Potri.016G082500
[exp]
52 / 2e-08 AT5G02750 176 / 1e-53 SHOOT GRAVITROPISM 9, RING/U-box superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0229 RING PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence
>Lus10012376 pacid=23176827 polypeptide=Lus10012376 locus=Lus10012376.g ID=Lus10012376.BGIv1.0 annot-version=v1.0
ATGACGAGTTTCCATCACGGAGCAGCAACAACGACGACCGTATTCAATCGAGCCCTGCCGGAGACATCGCACAGCCGCAGCGATTATGCCGAACAAGCAT
TTGAGCGTTTAGAAAGGTACTATAGGGAACATATGAACGATGAACACTGGCAATTTTTGCAAGGATTGGACGAAATAGTGGAAAGCACTCTGTCTCTGTT
AGACAGGGCGCCGGATGCGGAGGACTTCACCGCTGGTGAGTACGAGATCAAGAACATGGGTGCTTCCGATTTGGCGATCGAGAAGCTGGAGAGGCTGGAG
AAGTTCGACGGCGAGGATTGTTGTTGCACGATTTGCTTGGAGGAGATGGGCTGCGGCGAAGGAAGAGTGATTTGGTTGGAGTGTGAGCATGTGTTCGATG
AGAGTTGCTTGGTTTCTTGGCTGCGGATTTCGAATTCCTGCCCATTGTGCCGATTCCAAGTTTCGGATTGA
AA sequence
>Lus10012376 pacid=23176827 polypeptide=Lus10012376 locus=Lus10012376.g ID=Lus10012376.BGIv1.0 annot-version=v1.0
MTSFHHGAATTTTVFNRALPETSHSRSDYAEQAFERLERYYREHMNDEHWQFLQGLDEIVESTLSLLDRAPDAEDFTAGEYEIKNMGASDLAIEKLERLE
KFDGEDCCCTICLEEMGCGEGRVIWLECEHVFDESCLVSWLRISNSCPLCRFQVSD

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G46620 zinc finger (C3HC4-type RING f... Lus10012376
[exp]
0 1
AT2G43990 unknown protein Lus10008165
[exp]
6.1 0.8126
AT3G48660 Protein of unknown function (D... Lus10035198
[exp]
6.9 0.7687
AT3G13550 EMB144, COP10, ... FUSCA 9, EMBRYO DEFECTIVE 144,... Lus10034996
[exp]
8.4 0.7604
AT4G23700 ATCHX17 cation/H+ exchanger 17, cation... Lus10024717
[exp]
14.4 0.7647
AT1G55840 Sec14p-like phosphatidylinosit... Lus10022533
[exp]
19.5 0.7728
Lus10015620
[exp]
23.5 0.7568
AT4G19500 nucleoside-triphosphatases;tra... Lus10006907
[exp]
29.1 0.7403
AT3G48670 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 1... Lus10002305
[exp]
37.1 0.7576
AT5G66460 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl ... Lus10030347
[exp]
47.4 0.6813
AT4G23700 ATCHX17 cation/H+ exchanger 17, cation... Lus10024716
[exp]
53.1 0.7037

Lus10012376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.