Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20890 942 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 297 / 4e-94 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G20050 293 / 7e-93 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G18190 285 / 2e-89 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 274 / 1e-85 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G02530 214 / 1e-62 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 208 / 2e-60 TCP-1/cpn60 chaperonin family protein (.1) AT5G26360 203 / 2e-58 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 191 / 6e-54 TCP-1/cpn60 chaperonin family protein (.1) AT2G33210 87 / 7e-18 HSP60-2 heat shock protein 60-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032176 [exp] 1050 / 0 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10014511 [exp] 1009 / 0 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10028007 [exp] 807 / 0 AT5G20890 752 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10008406 [exp] 305 / 5e-97 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10037214 [exp] 286 / 6e-90 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10006457 [exp] 284 / 3e-89 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10011401 [exp] 284 / 4e-89 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10032467 [exp] 279 / 3e-87 AT3G20050 996 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10026773 [exp] 277 / 8e-87 AT3G11830 920 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G341100 [exp] 981 / 0 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.006G128600 [exp] 980 / 0 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G195300 [exp] 319 / 2e-102 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.009G157400 [exp] 309 / 2e-98 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.012G051300 [exp] 291 / 7e-92 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 285 / 9e-90 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.002G142700 [exp] 282 / 2e-88 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.010G051700 [exp] 277 / 1e-86 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.014G058500 [exp] 276 / 4e-86 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.008G182300 [exp] 273 / 3e-85 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10012380 pacid=23176761 polypeptide=Lus10012380 locus=Lus10012380.g ID=Lus10012380.BGIv1.0 annot-version=v1.0 ATGGCGGTAGAAGGAATTTTTAAGGATGATGCTAGTGAAGAAAAAGGAGAGCGCGCCAGAATGGCATCTTTTGTTGGTGCTATGGCTATTGCTGACTTGG TGAAGACAACTTTGGGTCCGAAAGGGATGGATAAAATTTTGCAGTCCACTGGAAGAGGTCATGAGGTCACTGTTACCAATGATGGAGCTACCATTTTGAA GTCACTTCACATTGACAATCCAGCTGCTAAAGTCCTTATTGATATTTCGAAAGTCCAAGATGATGAAGTTGGCGATGGAACAACATCTGTAGTTGTGTTG GCTGGTGAATTATTGAGGGAGGCAGAGAAACTTGTTGCCGCAAAAATCCACCCAATGACCATCATAGCAGGATATCGGATGGCTGCAGAGTGTGCCCGGA AGGCTTTGCTTGAAAGGGTAGTGGATAATAAGGCAGATGAAGAGAAGTTCAAGTCAGATCTCATGAAAATTGCGATGACAACTTTGAGCTCGAAAATATT GTCCCAGGATAAGGAACACTTTGGAAAGCTTGCTGTTGATGCTGTTTTGCGCCTACAGGGTAGCACAAACTTAGAGTCCATCCAAATCATTAAGAAGCCT GGTGGGTCACTGACGGATTCTTTCTTGGATGAAGGGTTTATTCTTGACAAGAAAATTGGACTGGGTCAACCAAAACGGATAGAAAATGCAAAGATTTTGG TAGCCAACACTGCAATGGACACAGACAAAGTAAAGATTTACGGTGCACGTGTTCGTGTTGATTCAATGGCTAAGGTTGCTGATATTGAAGCAGCCGAGAA GCAGAAGATGCGAGAAAAGGTGGATAAGATAATAGCCCATGGGATAAATTGCTTTGTCAACAGACAATTAATATACAATTTCCCAGAGGAACTCTTTGCA AATGCTGGAGTGCTCGCGATTGAGCATGCAGATTTTGATGGGATTGAACGGCTAGGTTTAGTTACTGGAGGCGAAATCGCATCAACCTTTGACAATCCTG AATCTGTTAAGCTTGGACACTGCAACCTTATTGAGGAAATTATGATTGGAGAGGACAAGTTGATCCATTTTTCTGGTGTTGCAATGGGCCAGGCATGCAC AATTGTACTAAGGGGTGCAAGTCATCATGTGCTTGACGAGGCAGAGAGGTCTCTGCACGATGCACTCTGCGTGTTGTCCCAGACCGTGAATGACAGCAGG GTTTTGTTTGGAGGTGGATGGCCTGAAATGGTGATGGCCAAGGCAGTAGATGAGCTTGCTCGAGTAACCCCTGGAAAAAGGTCCCATGCAATTGATGCTT TCTCAAGGGCTCTTGTGGCAATTCCGACCACCATTGCAGATAATGCTGGTCTAGACAGTGCTGAGCTGGTTGCACAGCTTCGGGCAGAGCACAACAAGGA AGGGTGCACTGTTGGGATCGATGTCATCTCTGGATCCGTGGGAGACATGGCAGAGCTTGGAATTTCGGAAGCATTCAAGGTTAAACAAGCTGTTCTACTT TCTGCAACTGAAGCTGCTGAAATGATACTCCGAGTTGACGAGATCATCACTTGTGCACCGCGCAGAAGAGAGGATAGAATGTAA
AA sequence Show only first row Show all	>Lus10012380 pacid=23176761 polypeptide=Lus10012380 locus=Lus10012380.g ID=Lus10012380.BGIv1.0 annot-version=v1.0 MAVEGIFKDDASEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGHEVTVTNDGATILKSLHIDNPAAKVLIDISKVQDDEVGDGTTSVVVL AGELLREAEKLVAAKIHPMTIIAGYRMAAECARKALLERVVDNKADEEKFKSDLMKIAMTTLSSKILSQDKEHFGKLAVDAVLRLQGSTNLESIQIIKKP GGSLTDSFLDEGFILDKKIGLGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMAKVADIEAAEKQKMREKVDKIIAHGINCFVNRQLIYNFPEELFA NAGVLAIEHADFDGIERLGLVTGGEIASTFDNPESVKLGHCNLIEEIMIGEDKLIHFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSR VLFGGGWPEMVMAKAVDELARVTPGKRSHAIDAFSRALVAIPTTIADNAGLDSAELVAQLRAEHNKEGCTVGIDVISGSVGDMAELGISEAFKVKQAVLL SATEAAEMILRVDEIITCAPRRREDRM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10012380 [exp]	0	1
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10005046 [exp]	1.4	0.9722
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031761 [exp]	3.5	0.9561
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10012633 [exp]	4.9	0.9502
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10040434 [exp]	5.1	0.9338
AT1G09640			Translation elongation factor ...		Lus10007148 [exp]	5.1	0.9575
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10008632 [exp]	5.7	0.9412
AT1G50920			Nucleolar GTP-binding protein ...		Lus10002558 [exp]	6.0	0.9390
AT4G15640			unknown protein		Lus10033970 [exp]	7.5	0.9329
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	8.8	0.9496
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10032467 [exp]	8.9	0.9453

Compare expression of checked genes

Lus10012380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.