Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02880 154 / 1e-40 unknown protein AT1G03290 146 / 1e-37 unknown protein AT5G64980 54 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028006 [exp] 670 / 0 AT1G03290 262 / 2e-80 unknown protein Lus10028005 [exp] 335 / 2e-105 AT1G03290 280 / 2e-84 unknown protein Lus10012382 [exp] 254 / 1e-75 AT1G03290 172 / 1e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G139000 [exp] 170 / 3e-46 AT1G03290 268 / 1e-82 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012381 pacid=23176788 polypeptide=Lus10012381 locus=Lus10012381.g ID=Lus10012381.BGIv1.0 annot-version=v1.0 ATGGGGTTCAAATGTGTTTATGAGTCTCAGATGGATGTCTTCCCTCAGGTTGACATCCGAATCCCGAGGGCTGTTGCTCTTGAGCATTCAAAGGACCCTT ATTCGGCTGTGGAAGCGGTTCTTTCTGAGATTCTTCCTGCTCTGGAGGATGAAACCCTCGTCTCCGAACCCACTCATCAGAGACGAGAAGAAGAACCTGA ACTGCAGGTGCAAACTGATCTGCTGCGCCGTAGACCAAGAGATTTAGGGAAGAACGTGTGTGCTCCGTCAGAGGCTTCTTCTTCGAGTTTGCCCCATCAT GTTACCCCTGCTGAGGTAGATACTCCTGAACAGTCTTTACCGAATTCGGATCATTCTGTTGCTGGCCCCAGTAATCGTGCAGGTGTTGACAGCATAGTTG GCCGTGAGCACATCACTCCTGTTGTGTCTTCGTTAGAAGGAGGCGGAGCAACTTCAGGAAGCATTTTCAACCGGCTTGGAGAACCTATTGATGATGCCGG TGCTTTGGCTGATCATGAGAGTGAAGAGAGAGCTTCACATTCTGCTTTAGATTCACTTGATCATTTGGCTGTTGGTGAGAAAGTTGCTGAAGTAAATGCA AGTGTTGACGTTGCTGTCGGCTTGAAAGGGTCTGCAGTAGAGCAGGGAGTAGTGGCTATGGGTGATTCTGATAATGGAATTGCGAATAGTCCAACTAAAG TGAGCATTGAGAGAACCTTGTTTTCTGCTGTCGAATCGGTGATGAACAAAATGAGGCAAGTTGAAGCGAAAGAGAAAGAGGCAGAACGAGCCAAAGAGGA AGCTGCAACAGCAGGTGTGAACATAAACGTCCAGCACGCAGGAGAGGTGTATGGTGAGAAGGCCATACTATCTACCGAAGTGAAGGAGTTGCAAGCTCGC ATAGCCAATCTTTCGGAGGAACGAGACTCTGCTCTAGCAGTTCTAGTTGAGATGCATCGAGTGTTGGAAGAACGAATGGTCGCTGCAGAAGAGCTGCTAA GAGCAGCTGAAAAGGAGAAGTCTGACAAGGAAGAGTCTGCACGCAAAGCTCTTGTTGAACAACAATCTATGATGGAGAAAGTCGTTCACGAGTCGACGAT CCTGCAAGAGGCACCAGAGGAGAATTCGAAGAAACATGGGAGGTTTTATATACTATCCGATGATAATCCTCTTCGCTTGATTACGCGGGAATTTCTAATG GATCGTGGTCACGTAGTTGATACACTGCAAGGAGAGATATCTGTCATCTGTCAGGACGTTCGTTTGCTGAAGGAGAAGATCGACAACCGCGTCCCGTTTA GTCAATCCATCTCTTCCAACCAGACAAGTTGCATCCTGGCTTCTTCAGGTTTGCCTACAAGAACTGGATCAGCAGTGGATGACGTTCCTGCATTTTGCGA TGTATCTATCGTCTCCAAACATATGAGTCCTGCATCGTCTGTACACAACGTCCAATCACCTAGGAGCAAAGTTGCAGAAGCTACCCTGTCATCGACCGAG AATGATGCTCTTAAGGGAAGTTCGATCACGAAAGAGCCGGTTCTGGATGATGGATGGGGCATAGTCAATGGCAATGGTGATGTATGA
AA sequence Show only first row Show all	>Lus10012381 pacid=23176788 polypeptide=Lus10012381 locus=Lus10012381.g ID=Lus10012381.BGIv1.0 annot-version=v1.0 MGFKCVYESQMDVFPQVDIRIPRAVALEHSKDPYSAVEAVLSEILPALEDETLVSEPTHQRREEEPELQVQTDLLRRRPRDLGKNVCAPSEASSSSLPHH VTPAEVDTPEQSLPNSDHSVAGPSNRAGVDSIVGREHITPVVSSLEGGGATSGSIFNRLGEPIDDAGALADHESEERASHSALDSLDHLAVGEKVAEVNA SVDVAVGLKGSAVEQGVVAMGDSDNGIANSPTKVSIERTLFSAVESVMNKMRQVEAKEKEAERAKEEAATAGVNINVQHAGEVYGEKAILSTEVKELQAR IANLSEERDSALAVLVEMHRVLEERMVAAEELLRAAEKEKSDKEESARKALVEQQSMMEKVVHESTILQEAPEENSKKHGRFYILSDDNPLRLITREFLM DRGHVVDTLQGEISVICQDVRLLKEKIDNRVPFSQSISSNQTSCILASSGLPTRTGSAVDDVPAFCDVSIVSKHMSPASSVHNVQSPRSKVAEATLSSTE NDALKGSSITKEPVLDDGWGIVNGNGDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03290			unknown protein		Lus10012381 [exp]	0	1
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10017166 [exp]	2.2	0.8617
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10040620 [exp]	3.5	0.8506
AT1G01490			Heavy metal transport/detoxifi...		Lus10027524 [exp]	4.9	0.8273
AT1G16670			Protein kinase superfamily pro...		Lus10019933 [exp]	7.7	0.8610
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Lus10038703 [exp]	8.7	0.8496
AT1G53440			Leucine-rich repeat transmembr...		Lus10005550 [exp]	8.8	0.8126
AT5G36930			Disease resistance protein (TI...		Lus10013729 [exp]	14.3	0.8133
					Lus10040920 [exp]	17.5	0.8463
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	19.0	0.8099
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10041796 [exp]	23.2	0.8087

Compare expression of checked genes

Lus10012381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.