Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57620 151 / 5e-44 glyoxal oxidase-related protein (.1) AT1G75620 147 / 1e-42 glyoxal oxidase-related protein (.1) AT1G19900 147 / 3e-42 glyoxal oxidase-related protein (.1) AT1G14430 129 / 6e-36 glyoxal oxidase-related protein (.1) AT3G53950 108 / 3e-28 glyoxal oxidase-related protein (.1) AT1G67290 77 / 4e-17 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) AT5G19580 77 / 5e-17 glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024312 [exp] 210 / 2e-66 AT1G75620 656 / 0.0 glyoxal oxidase-related protein (.1) Lus10013274 [exp] 147 / 1e-44 AT1G14430 301 / 1e-99 glyoxal oxidase-related protein (.1) Lus10015949 [exp] 141 / 4e-40 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1) Lus10030798 [exp] 133 / 4e-37 AT1G14430 623 / 0.0 glyoxal oxidase-related protein (.1) Lus10024342 [exp] 100 / 2e-25 AT3G53950 841 / 0.0 glyoxal oxidase-related protein (.1) Lus10012981 [exp] 94 / 4e-23 AT1G67290 412 / 3e-139 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10034959 [exp] 88 / 7e-21 AT1G67290 619 / 0.0 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10011109 [exp] 87 / 2e-20 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1) Lus10043230 [exp] 86 / 3e-20 AT5G19580 620 / 0.0 glyoxal oxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G235500 [exp] 179 / 2e-54 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.002G027000 [exp] 178 / 5e-54 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 170 / 5e-51 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 149 / 3e-43 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 147 / 2e-42 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.010G034200 [exp] 142 / 2e-40 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 118 / 8e-32 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 100 / 2e-25 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 83 / 4e-19 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Potri.006G160800 [exp] 79 / 6e-18 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07250 [flax] [poplar] Glyoxal_oxid_N Glyoxal oxidase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10012386 pacid=23147296 polypeptide=Lus10012386 locus=Lus10012386.g ID=Lus10012386.BGIv1.0 annot-version=v1.0 ATGTTGGTTACCGTTTCTCTTCTCCTCCTCATCTTTGCCGCTGCCACAACCTCCGGCAGCGGAGGTAGCTGGGAATTTCTTCAAAAAAGCATAGGCATAC CAGCAATGCACATGCAGCTTCTCTCCAACGACCGCGTCGTCATCTTTGACCGTACTGATTTCGGCCACTCCAACCTCTCATTACCCCAAGGCAAATGCCG TCACGATCCCACTGAGCGAATGGTCCAAACCGACTGCACCGCTCACTCCGTCGAGTACGACGCCCCATCCAACTCCTTCCGCCCCCTCACCGTCCAGACC GACGTCTGGTGCTCCTCCGGCGCCGCCATGCCCGACGGCCGCCTTGTTCAGACCGGCGGGTACAGCGACGGGGGGCGCCGAGCAACGGAGCCAGAGAATT CCGCCCCTGCAGTAATGACACCTGTGACTGGATAG
AA sequence Show only first row Show all	>Lus10012386 pacid=23147296 polypeptide=Lus10012386 locus=Lus10012386.g ID=Lus10012386.BGIv1.0 annot-version=v1.0 MLVTVSLLLLIFAAATTSGSGGSWEFLQKSIGIPAMHMQLLSNDRVVIFDRTDFGHSNLSLPQGKCRHDPTERMVQTDCTAHSVEYDAPSNSFRPLTVQT DVWCSSGAAMPDGRLVQTGGYSDGGRRATEPENSAPAVMTPVTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57620			glyoxal oxidase-related protei...		Lus10012386 [exp]	0	1
AT1G19900			glyoxal oxidase-related protei...		Lus10012387 [exp]	1.0	0.9028
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031835 [exp]	6.0	0.8059
AT1G12040		LRX1	leucine-rich repeat/extensin 1...		Lus10040566 [exp]	6.7	0.7697
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10031522 [exp]	17.9	0.7655
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10003651 [exp]	20.8	0.7243
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021719 [exp]	23.5	0.7303
AT2G29500			HSP20-like chaperones superfam...		Lus10016458 [exp]	32.2	0.7327
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	32.5	0.7309
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10042408 [exp]	34.2	0.7043
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Lus10012848 [exp]	35.0	0.7421

Compare expression of checked genes

Lus10012386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.