Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38900 329 / 1e-107 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G21230 301 / 4e-97 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G43700 158 / 2e-44 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT1G06850 150 / 2e-42 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT2G40620 152 / 6e-42 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G31370 149 / 8e-41 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT1G06070 147 / 1e-39 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G12940 127 / 2e-33 bZIP UNE4 unfertilized embryo sac 4, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G13150 123 / 4e-32 bZIP AtbZIP31 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G12900 98 / 6e-23 bZIP AtbZIP33 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024314 [exp] 739 / 0 AT4G38900 337 / 1e-110 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10033174 [exp] 489 / 5e-172 AT4G38900 283 / 7e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10010616 [exp] 480 / 2e-168 AT4G38900 276 / 1e-87 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10042057 [exp] 387 / 3e-130 AT4G38900 522 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10018061 [exp] 387 / 4e-130 AT4G38900 529 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10012391 [exp] 306 / 2e-103 AT4G38900 196 / 3e-60 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10000069 [exp] 255 / 2e-83 AT4G38900 202 / 3e-62 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10018899 [exp] 169 / 2e-48 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10028595 [exp] 167 / 6e-48 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G125400 [exp] 405 / 9e-137 AT4G38900 481 / 1e-164 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.004G163800 [exp] 400 / 1e-134 AT4G38900 425 / 1e-142 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.005G190700 [exp] 161 / 1e-45 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.002G069500 [exp] 160 / 2e-45 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.013G091400 [exp] 158 / 2e-44 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.019G130000 [exp] 159 / 3e-44 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G156900 [exp] 155 / 1e-42 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.017G027400 [exp] 155 / 2e-42 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.007G130800 [exp] 153 / 8e-42 AT1G06070 392 / 9e-135 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 89 / 2e-19 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10012390 pacid=23147303 polypeptide=Lus10012390 locus=Lus10012390.g ID=Lus10012390.BGIv1.0 annot-version=v1.0 ATGTGTGATTCAATGCGGCAATCCTCACCCAGTGATAGTCTGGAAGAGGCTAGCAGCAACAAGAGGATTGGTTTGCCTCCTTCGCATCCAAATAACCATC ATATATTGTCCTCTGGGTTGGTCTCGGACCAGCAGCAAGTGGGTTTGAATCGCGGCAGGCCATCTCATTTGAGGTCTTTGTCTCAATCCTCAATGTTCTA TCTTGATTGCTTTCCTCCATTGAGTCCTCTGCAGAATCCGTCCATGGTCGGGGATGTGTCTATGGAAGAAAAGGCTGGTGTTTCCCTTGGATTGTTGGTT CCTGGTTCGAAGGTCAAAGAGGGATTGCCTCCTCGTAGAGGCCACAGGCGGTCCATGAGTGATAATGTCCCATTGGGATTTGGAGCCATGATTCAATCTT CGCCTCAACTGATTCCTATTGGGGGCCAGGGTGGTTTTGATCGGTTCGAATTGGTGAAACAGGAGGCGGAAGGGATGGGTGATAGGAGATCAATGGTAGA GGTTGGTGATGATATGTTGAATGCTTATATGGATAATATTGATCCATTGAACTCATATGGTACTGAGGATAAAGATTGGGATAGCAGGGTTAGTGGTACT AAGACAAATGGAACTGAAAACAGTGATAATGAGGCAGAGAGTCATATAAAAGGGCTTAAGAGAAATGCTGATGGTGACATTGGACCTGCTGGCCGGCACT ATAGGAGTGTGTCGATGGATAGCTTTATGGGAAACTTGCGATTAGATGATGAATTGATGATGCTTCCTCCTGCTGTGAATAGAATTGGTCAACTCTCACC CAGCGGCTCAATGCAAGGGAGTCTCACCAAGTTCAACTTGGAGTTTGTGAACGGTGAATTTACTGAAGCGGAGCTGAAGAAGATTATGTCCAATGACAAG CTTACTGAGCTTGCAATGGCTGATCCAAAGCGTGTCAAAAGGATCTTGGCAAATCGTCTATCTGCTGCTCGGTCCAAGGAGCGAAAAATGAGGTACATTT CTGAATTAGAGCAAAAGGTGCAAACTTTACAGGCCGAAGCCACTACATTGTCAGCCCAGGTTACGGTGTTACAGCGTGATTCTTCAAATCTGACAAATCA GAACCATGAACTGAAGTTTCGCCTTCAAGCAATGGAACAACAGGCCCAACTCAAAGATGCTCTAAATGAAGCATTAGTTGGTGAAGTCCAACGACTGAGG CTTGCTGCCACAGATGTTGGAGCAGATACTAGTCATCATCATCATCAGCAGCAGCAGCAGCTTCTTGGTAATATAATGCAGCAACAGAATGCATATCAGC ATCAGAGACAACGATCAACACAGCTAAACCAAGCGCAGAGCAGCAAATGA
AA sequence Show only first row Show all	>Lus10012390 pacid=23147303 polypeptide=Lus10012390 locus=Lus10012390.g ID=Lus10012390.BGIv1.0 annot-version=v1.0 MCDSMRQSSPSDSLEEASSNKRIGLPPSHPNNHHILSSGLVSDQQQVGLNRGRPSHLRSLSQSSMFYLDCFPPLSPLQNPSMVGDVSMEEKAGVSLGLLV PGSKVKEGLPPRRGHRRSMSDNVPLGFGAMIQSSPQLIPIGGQGGFDRFELVKQEAEGMGDRRSMVEVGDDMLNAYMDNIDPLNSYGTEDKDWDSRVSGT KTNGTENSDNEAESHIKGLKRNADGDIGPAGRHYRSVSMDSFMGNLRLDDELMMLPPAVNRIGQLSPSGSMQGSLTKFNLEFVNGEFTEAELKKIMSNDK LTELAMADPKRVKRILANRLSAARSKERKMRYISELEQKVQTLQAEATTLSAQVTVLQRDSSNLTNQNHELKFRLQAMEQQAQLKDALNEALVGEVQRLR LAATDVGADTSHHHHQQQQQLLGNIMQQQNAYQHQRQRSTQLNQAQSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10012390 [exp]	0	1
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10012391 [exp]	1.0	0.9161
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10011917 [exp]	2.0	0.9062
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10022848 [exp]	2.8	0.8839
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10012235 [exp]	4.9	0.8604
					Lus10005785 [exp]	5.2	0.8421
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014272 [exp]	7.1	0.8610
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025974 [exp]	8.5	0.8869
AT4G34150			Calcium-dependent lipid-bindin...		Lus10002825 [exp]	9.8	0.8439
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10003666 [exp]	10.2	0.8551
AT4G17140			pleckstrin homology (PH) domai...		Lus10003381 [exp]	16.6	0.8379

Compare expression of checked genes

Lus10012390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.