Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38900 194 / 2e-59 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G21230 173 / 1e-51 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G43700 140 / 9e-41 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT2G40620 135 / 1e-38 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06850 132 / 2e-38 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT1G06070 134 / 9e-38 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G31370 132 / 5e-37 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT2G12940 88 / 4e-21 bZIP UNE4 unfertilized embryo sac 4, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G13150 87 / 6e-21 bZIP AtbZIP31 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G12900 84 / 8e-20 bZIP AtbZIP33 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012390 [exp] 305 / 2e-103 AT4G38900 337 / 8e-111 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10024314 [exp] 265 / 6e-88 AT4G38900 337 / 1e-110 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10000069 [exp] 230 / 2e-77 AT4G38900 202 / 3e-62 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10033174 [exp] 231 / 1e-74 AT4G38900 283 / 7e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10010616 [exp] 219 / 4e-70 AT4G38900 276 / 1e-87 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10042057 [exp] 198 / 9e-61 AT4G38900 522 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10018061 [exp] 198 / 9e-61 AT4G38900 529 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10018899 [exp] 152 / 2e-45 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10028595 [exp] 149 / 6e-44 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G125400 [exp] 203 / 2e-62 AT4G38900 481 / 1e-164 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.004G163800 [exp] 200 / 2e-61 AT4G38900 425 / 1e-142 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.005G190700 [exp] 145 / 8e-43 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.002G069500 [exp] 145 / 2e-42 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.019G130000 [exp] 144 / 8e-42 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G156900 [exp] 139 / 8e-40 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G091400 [exp] 138 / 8e-40 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.017G027400 [exp] 137 / 1e-38 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.007G130800 [exp] 136 / 2e-38 AT1G06070 392 / 9e-135 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 85 / 9e-20 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF07716 [flax] [poplar] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Lus10012391 pacid=23147291 polypeptide=Lus10012391 locus=Lus10012391.g ID=Lus10012391.BGIv1.0 annot-version=v1.0 ATGGAGCGAGAGGAAGAAAAAGAGAGGGGGAATAGAATTGGTCAACTCTCACCCAGCGGCTCAATGCAAGGGAGTCTCACCAAGTTCAACTTGGAGTTTG TGAACGGTGAATTTACTGAAGCGGAGCTGAAGAAGATTATGTCCAATGACAAGCTTACTGAGCTTGCAATGGCTGATCCAAAGCGTGTCAAAAGGATCTT GGCAAATCGTCTATCTGCTGCTCGGTCCAAGGAGCGAAAAATGAGGTACATTTCTGAATTAGAGCAAAAGGTGCAAACTTTACAGGCCGAAGCCACTACA TTGTCAGCCCAGGTTACGGTGTTACAGAACCATGAACTGAAGTTTCGCCTTCAAGCAATGGAACAACAGGCCCAACTCAAAGATGCTCTAAATGAAGCAT TAGTTGGTGAAGTCCAACGACTGAGGCTTGCTGCCACAGATGTTGGAGCAGATACTAGTCATCATCATCATCAGCAGCAGCAGCAGCTTCTTGGTAATAT AATGCAGCAACAGAATGCATATCAGCATCAGAGACAACGATCAACACAGCTAAACCAAGCGCAGAGCAGCAAATGA
AA sequence Show only first row Show all	>Lus10012391 pacid=23147291 polypeptide=Lus10012391 locus=Lus10012391.g ID=Lus10012391.BGIv1.0 annot-version=v1.0 MEREEEKERGNRIGQLSPSGSMQGSLTKFNLEFVNGEFTEAELKKIMSNDKLTELAMADPKRVKRILANRLSAARSKERKMRYISELEQKVQTLQAEATT LSAQVTVLQNHELKFRLQAMEQQAQLKDALNEALVGEVQRLRLAATDVGADTSHHHHQQQQQLLGNIMQQQNAYQHQRQRSTQLNQAQSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10012391 [exp]	0	1
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10012390 [exp]	1.0	0.9161
					Lus10005785 [exp]	3.2	0.8484
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10024314 [exp]	9.8	0.8563
AT5G48290			Heavy metal transport/detoxifi...		Lus10016061 [exp]	10.2	0.8687
AT1G75860			unknown protein		Lus10034539 [exp]	10.5	0.8611
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10003666 [exp]	11.2	0.8527
AT3G07200			RING/U-box superfamily protein...		Lus10022569 [exp]	12.4	0.8673
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10008015 [exp]	13.6	0.8625
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10022848 [exp]	14.7	0.8168
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10023866 [exp]	14.8	0.8334

Compare expression of checked genes

Lus10012391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.