Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31500 486 / 7e-169 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT4G13770 427 / 7e-146 REF2, CYP83A1 REDUCED EPIDERMAL FLUORESCENCE 2, "cytochrome P450, family 83, subfamily A, polypeptide 1", cytochrome P450, family 83, subfamily A, polypeptide 1 (.1) AT3G26310 421 / 2e-143 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26300 419 / 1e-142 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26320 414 / 1e-140 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT5G57260 414 / 2e-140 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26330 409 / 2e-138 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26210 402 / 5e-136 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT1G13080 399 / 8e-135 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26290 397 / 6e-134 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033172 [exp] 625 / 0 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10024315 [exp] 605 / 0 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10004517 [exp] 586 / 0 AT4G31500 489 / 6e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034505 [exp] 584 / 0 AT4G31500 507 / 7e-177 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034502 [exp] 574 / 0 AT4G31500 477 / 1e-166 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10010066 [exp] 571 / 0 AT4G31500 487 / 3e-169 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012395 [exp] 557 / 0 AT4G31500 492 / 4e-171 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10033173 [exp] 514 / 1e-179 AT4G31500 462 / 3e-159 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012400 [exp] 481 / 1e-166 AT4G31500 458 / 8e-158 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G025300 [exp] 612 / 0 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025425 [exp] 609 / 0 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025350 [exp] 604 / 0 AT4G31500 514 / 7e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025500 [exp] 573 / 0 AT4G31500 502 / 6e-175 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025800 [exp] 569 / 0 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026500 [exp] 567 / 0 AT4G31500 489 / 8e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026100 [exp] 555 / 0 AT4G31500 472 / 9e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026300 [exp] 551 / 0 AT4G31500 474 / 4e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.008G184000 [exp] 430 / 1e-146 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184400 [exp] 429 / 3e-146 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10012399 pacid=23147287 polypeptide=Lus10012399 locus=Lus10012399.g ID=Lus10012399.BGIv1.0 annot-version=v1.0 ATGGATTCATCCATCTTCCTGCTCCTACTGATCTCACTCCCAATCATCCTCTTAATCCTCGTTCAAACCCAGAAACCAAAGAAACCCCTCAATCTTCCTC CAGGTCCACCGGGTCTCCCCATACTAGGCAACTTGCTCCAAATCGACAACTCATCCCCACACCGTTACTTCACCCAACTCGCCCAGAAACACGGGCCCCT CATGTTCTTGCGCTTGGGATTCGTGCCAAGCATAGTCATCTCCTCATCAAAACTAGCCAAAGAGGTGATGAAAACTCAAGACATAACCTTTTGCAGCCGC CCTTCCTTAACCGGCCAGCAGAGGCTATCTTACAACGGCCTAGACTTGGTCTTCTCCCCTTACGATTCCTACTACACGGAGATGAGGAAGATATGCATGG TTCACTTGTTCAACCCTCAACGAGTCCAGACATTCCGACCAATTCGAGAATACGAGGTTTCTCAAATGATGGACAAGATATACAAATTAGCAGATGGTGG TTGTGGTGGAGAAGGATTCAACTTGAGTGAGGCAATGATGTATCTGACGAGTACCATCATATGCAGGGTTGGGTTCGGGAAGAGGTACGAGGAAGAAGGG ATCGAGAGGAGTCGGTTCCAATCGTTGTTGAATGAGACTCAGGCTTTGTTCACTAGCTTCTTTGTGGCCGATTATTTCCCCTATTACGTTGGGTCTGTGT TGGATAAAGTCTTGGGTAACAAGAGGCGGCTTGAGAAGAACTTCAACGAGTTTGATGCTTTCTACCAAGAGATTATAGATGAGCACTTGCATCCGGACAG AGTGAAGCCAGAGCAAGAAGACATACTTGATGTTCTGCTCCAAATTATGAAAGATCCTTCCTTCAAAATTCGTCTCACTTTCGATCACATCAAAGCAATG CTCATGAATGTATTTGTAGCAGGGACGGACACAAGTGCAGCGACAGTGGTATGGGCGATGAGCTTCCTAATGAAGAACCCAGAATCCATGACCAAACTCC AACAAGAAGTGAGAGGCTTAATGGGAAACAGAGGATTCATAAACGAAGACGACATCCAACAATTTCCATACCTGAAAGCGGTGGTGAAAGAGACATTCAG GCTGCAACCAACTGTTCCATTCCTAGTTCCCAGACACACCACTGCAAAATCCAACCTAGACGGCTACGAAATCCCGCCCAATACGCTCGTCCAAATCAAC ACGTGGGCGATCGGCAGGGACCCTGAAATCTGGGAGTCCCCTGACGACTTTAAGCCAGAGAGGTTTTTGGACAGCTTGATTGATGTGAAGGGGCAGGACT TTGAGCTGACACCTTTTGGAGCTGGAAGGAGAATATGCCCTGGGTTGCATTTAGGGCTTGTGAATGTGGAGTTGTCGCTGGCTAATTTGGTATATAAGTT CGATTGGGGAATGCCTGTTGGAATGAAGAAGGAAGATTTGGATATGGAAGTGCTACCTGGGATTACTATGCACAAGAGGAATCATCTTCGACTTGTTGCC ACTAGGCGTATATGA
AA sequence Show only first row Show all	>Lus10012399 pacid=23147287 polypeptide=Lus10012399 locus=Lus10012399.g ID=Lus10012399.BGIv1.0 annot-version=v1.0 MDSSIFLLLLISLPIILLILVQTQKPKKPLNLPPGPPGLPILGNLLQIDNSSPHRYFTQLAQKHGPLMFLRLGFVPSIVISSSKLAKEVMKTQDITFCSR PSLTGQQRLSYNGLDLVFSPYDSYYTEMRKICMVHLFNPQRVQTFRPIREYEVSQMMDKIYKLADGGCGGEGFNLSEAMMYLTSTIICRVGFGKRYEEEG IERSRFQSLLNETQALFTSFFVADYFPYYVGSVLDKVLGNKRRLEKNFNEFDAFYQEIIDEHLHPDRVKPEQEDILDVLLQIMKDPSFKIRLTFDHIKAM LMNVFVAGTDTSAATVVWAMSFLMKNPESMTKLQQEVRGLMGNRGFINEDDIQQFPYLKAVVKETFRLQPTVPFLVPRHTTAKSNLDGYEIPPNTLVQIN TWAIGRDPEIWESPDDFKPERFLDSLIDVKGQDFELTPFGAGRRICPGLHLGLVNVELSLANLVYKFDWGMPVGMKKEDLDMEVLPGITMHKRNHLRLVA TRRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012399 [exp]	0	1
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016317 [exp]	2.0	0.8295
AT3G58060			Cation efflux family protein (...		Lus10016239 [exp]	3.6	0.7594
AT4G32680			unknown protein		Lus10035889 [exp]	5.5	0.7882
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002738 [exp]	6.3	0.7906
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10020979 [exp]	6.6	0.7626
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	8.2	0.8249
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10019927 [exp]	8.5	0.7080
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Lus10030147 [exp]	8.5	0.7908
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10043097 [exp]	10.6	0.7802
AT2G23770			protein kinase family protein ...		Lus10022488 [exp]	11.0	0.7615

Compare expression of checked genes

Lus10012399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.