Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31500 418 / 3e-142 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT3G26320 385 / 2e-129 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT4G13770 376 / 7e-126 REF2, CYP83A1 REDUCED EPIDERMAL FLUORESCENCE 2, "cytochrome P450, family 83, subfamily A, polypeptide 1", cytochrome P450, family 83, subfamily A, polypeptide 1 (.1) AT3G26330 376 / 8e-126 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26300 374 / 7e-125 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26310 371 / 5e-124 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G57260 367 / 4e-122 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26210 350 / 8e-116 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT5G25120 349 / 3e-115 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT1G13080 344 / 3e-113 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033172 [exp] 526 / 0 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10024315 [exp] 519 / 0 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034505 [exp] 509 / 9e-178 AT4G31500 507 / 7e-177 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10004517 [exp] 504 / 6e-176 AT4G31500 489 / 6e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10010066 [exp] 493 / 1e-171 AT4G31500 487 / 3e-169 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034502 [exp] 489 / 6e-171 AT4G31500 477 / 1e-166 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10033173 [exp] 489 / 8e-170 AT4G31500 462 / 3e-159 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012399 [exp] 462 / 2e-159 AT4G31500 516 / 2e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012395 [exp] 447 / 2e-153 AT4G31500 492 / 4e-171 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G025300 [exp] 478 / 9e-166 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025425 [exp] 475 / 1e-164 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025350 [exp] 474 / 8e-164 AT4G31500 514 / 7e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025800 [exp] 448 / 7e-154 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025500 [exp] 447 / 1e-153 AT4G31500 502 / 6e-175 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026500 [exp] 446 / 4e-153 AT4G31500 489 / 8e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026100 [exp] 430 / 3e-147 AT4G31500 472 / 9e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026300 [exp] 427 / 2e-145 AT4G31500 474 / 4e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.012G090000 [exp] 370 / 3e-123 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.015G086000 [exp] 369 / 4e-123 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10012400 pacid=23147282 polypeptide=Lus10012400 locus=Lus10012400.g ID=Lus10012400.BGIv1.0 annot-version=v1.0 ATGTTTCTTCTCCTTCACAACCACAGCATAAACAAAACTTATTCTCATCATAATCTCTGGCCACCAGGTCCACTTGGTCTCCCCTTAATCGGGAACTTGC TCCAAGTTGATGCATCCGTTCCTCATATATCTTTAAGGAAACTCTCAACCAAATACGGACGACATCTATTCTCCTTGAGAATAGGCAGTGTCAGAACCAT CGTTGTGTCCTCACCCGAAATAGCGAAGCAGGTCCTTCGAACACACGACCTTTCACTCTCGAGCCGGCCTTCTAGGGTCGGCCAACGTAAGCTGTCTTAT GGCGGTGTAAACTTGGCATTTTCGCCTTTCGATACCTATTCAAGAAACATGAAGAAACTCTGCATCGTACATTTCTTCAACTCTAAGAAAGTCCAATCTT TTAGTCCCATCAGAACTTACGAGGTTTCGAAGCTGATGGACAAGATTAATTCTCAATCCTCTAAGACTACGCCTTTCAACTTGTCCAACGCGATGATATC TCTGGCCGGCACTCTTGTTTGCCGGATGGCCTTTAGCAAGAAGTATGACGACGGAGAGGAAGAGCAAATCAGATTCCAGTCCTTGGTTAAACAGACTCAA ACCATGTTTACCAGCTTCTTTTTCTCCGACCATTTCCCTTGTTTGGGATTCGTCGATAAGCTCACTGGTTTGACTAATCAGCTCGACGCTGCTTTCGATG AGCTTGATGCCTTCTGTCAAGAGATACTTGATGAACATCTTTACCCGAATAGTGTGAAGGCTGTTGAGCAAGTGGATCTTGTCGATCTTCTGCTTCGGAT CATGAAGGATGGGTCCATCAATAATGTTCAGCTCACCGTGAACCACGTCAAAGCAATTATCATGGACTTATTCATCGCTGGTACAGACACAGCAGCAGCA GCTTTAGTATGGGGAATGACATATCTAATGAAGAACCCATCATCCATGCACAAAGCTCAACTTGAAGTGAGGCAAGCAGTTGGCAGCGGCAAAGGTTTCG TGACGGAAGAAGACATTAAACAACTACCTTACCTAAAATCTGTAGTTAAAGAGACATTGAGGCTCCAGCCACCAGCTCCACTGCTAGTTCGAGAATCATG TGAAAATTTCAGCTTAGGGGACTACAAATTCCCGTCTAAAACGGTGGTTTACGTAAATGCATGGGCTATTGGGAGGGACGCTGAAACTTGGGGAGAAGAT TCAGAGGAGTTTAAGCCGGAGAGGTTCATGGGAACTGATCATGAGCGTGTTGCTGATAACAGTACTACTTATATGGGGAATTTGGACTTTGAGTTGATTC CGTTTGGAGGAGGAAGAAGGAAGTGTCCCGGAATGAATATGGGGATTGCAAGTGTGGAGCTCACTTTGGCTAACTTGCTCTATGGGTTTGATTGGGAAAT GCCAGAGGGAATGACGAAACAAGATTTGGATATGGAAGTCATTTTGGGACTTACCATGCATAAGAAACATGACCTTTGCCTCGTACCCAAAAGACATGTA TGA
AA sequence Show only first row Show all	>Lus10012400 pacid=23147282 polypeptide=Lus10012400 locus=Lus10012400.g ID=Lus10012400.BGIv1.0 annot-version=v1.0 MFLLLHNHSINKTYSHHNLWPPGPLGLPLIGNLLQVDASVPHISLRKLSTKYGRHLFSLRIGSVRTIVVSSPEIAKQVLRTHDLSLSSRPSRVGQRKLSY GGVNLAFSPFDTYSRNMKKLCIVHFFNSKKVQSFSPIRTYEVSKLMDKINSQSSKTTPFNLSNAMISLAGTLVCRMAFSKKYDDGEEEQIRFQSLVKQTQ TMFTSFFFSDHFPCLGFVDKLTGLTNQLDAAFDELDAFCQEILDEHLYPNSVKAVEQVDLVDLLLRIMKDGSINNVQLTVNHVKAIIMDLFIAGTDTAAA ALVWGMTYLMKNPSSMHKAQLEVRQAVGSGKGFVTEEDIKQLPYLKSVVKETLRLQPPAPLLVRESCENFSLGDYKFPSKTVVYVNAWAIGRDAETWGED SEEFKPERFMGTDHERVADNSTTYMGNLDFELIPFGGGRRKCPGMNMGIASVELTLANLLYGFDWEMPEGMTKQDLDMEVILGLTMHKKHDLCLVPKRHV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012400 [exp]	0	1
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018067 [exp]	1.7	0.9575
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10042061 [exp]	2.4	0.9411
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018068 [exp]	3.5	0.9341
AT3G45070			P-loop containing nucleoside t...		Lus10033719 [exp]	6.6	0.8671
AT5G51160			Ankyrin repeat family protein ...		Lus10029008 [exp]	8.9	0.8475
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10002192 [exp]	9.5	0.8025
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	10.1	0.8445
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018501 [exp]	11.5	0.8222
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005765 [exp]	14.8	0.8259
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10019386 [exp]	17.7	0.8331

Compare expression of checked genes

Lus10012400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.