Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19860 222 / 2e-68 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G51180 84 / 2e-17 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G66270 83 / 4e-17 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024316 [exp] 692 / 0 AT1G19860 261 / 1e-83 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10040921 [exp] 55 / 8e-08 AT4G02560 677 / 0.0 luminidependens, Homeodomain-like superfamily protein (.1.2) Lus10009816 [exp] 54 / 2e-07 AT4G02560 559 / 0.0 luminidependens, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G025100 [exp] 333 / 2e-111 AT1G19860 319 / 8e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G236300 [exp] 327 / 6e-109 AT1G19860 318 / 2e-105 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G116001 [exp] 134 / 9e-37 AT1G19860 122 / 3e-32 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.007G013600 [exp] 115 / 5e-28 AT1G19860 109 / 1e-25 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G115901 [exp] 70 / 6e-14 AT5G66270 75 / 5e-16 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.002G209216 [exp] 51 / 1e-06 AT4G02560 364 / 4e-109 luminidependens, Homeodomain-like superfamily protein (.1.2) Potri.014G132800 [exp] 50 / 2e-06 AT4G02560 349 / 8e-104 luminidependens, Homeodomain-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012404 pacid=23147295 polypeptide=Lus10012404 locus=Lus10012404.g ID=Lus10012404.BGIv1.0 annot-version=v1.0 ATGGTCATTTCTGCTTTCTTTCATCAGGTGCGATTGTTCCTGTCAGATGAATCTCCTTCACAAGTTGGAGCGAGCCCTCAAGATCACCTCCAAGCAAAGG CATCATGGGTATCTCATCTAACTGGAACAGCCAATGAAGATGTTCTACCTCCTGGGTTTGAATTAGGCCAGCCTCCCAACCAGCCACAGATCAATGCATC TGATATTCCCCTTGTCAAATGGAGGTGTCCACCTTGGTTTTTTATAAACCTAGAATGGCTAGTGGTTGCCGGAGAAGAGAGCCAGGATGTTGAGCCTCAA AACCAACGGGAGATGAGAGTACTGGAAGCCGTTTACCCTCGCCCTTCTGCAATTCCGACCAACCCCACTTTTTCTGTGGAAATGAAGGATTCCAAGCATA ATGATCATCAAGTCCCTGTTATTCCCATCACCCCAATTGAAGATGAAGACTCATCTGATGTCATTAATAGTTTTGTGGGATCAATGAGTGCACAACCACA GTCGTCTGTTCCTGGGCTTTCTCCATTCAGCAGTGTTCCCGAAAATATTGCTGGTGGCCTTGGCCATGACGTCGAATCTGATGTAGTAGCTGTAGCATCT GCAGCCTTTTCTGCTATGAATGGGACCAGCACTGAACAAGGAATCTTAATAGACCATGACCTGCTCATCAAAATCCTCAGCAACCCACAATTGATGGAGA TATTAGTTAAAGATTCTGCTAAGCAAGCTGCACCATTTGTTGCGTCAGCACCTAAAATAACATCATCGGAACCATCTCATATTTACAATGATAGAACAGA ATCCAATGCAACAGCGTCTTTAAGTGCCAGTGAAGCGGTGCCATTTTACTCTACTGGTGCTAGTGTACAAGCTCCTCCGGCGGCATCTTATATGAATATT CCTCCACCTGCAGTGTCTTCTTCATCTAGTGGAGTGGTTAAAGATGTCAGTTACTTGAAGAACTTGATTCAGCAGCATGGAGGTGAAAGACAAGATCGAT ATGGACAACAACTGCGACAGGATCAGTTAGGGTTTTTGAAACAGAGGACAAAAATTATGAAGCCTTGTGCATATTTCAACAGCTCGAGAGGATGTAGAAA CGGAGCCAACTGTGCGTTTCAGCATGATAGCAGCAGCTCTCAAGAGAGAATGGGATCTGAGATGCAAAACTCCAAAAGAATGAAAATGGATAGAGAGATT AGTAGTTAG
AA sequence Show only first row Show all	>Lus10012404 pacid=23147295 polypeptide=Lus10012404 locus=Lus10012404.g ID=Lus10012404.BGIv1.0 annot-version=v1.0 MVISAFFHQVRLFLSDESPSQVGASPQDHLQAKASWVSHLTGTANEDVLPPGFELGQPPNQPQINASDIPLVKWRCPPWFFINLEWLVVAGEESQDVEPQ NQREMRVLEAVYPRPSAIPTNPTFSVEMKDSKHNDHQVPVIPITPIEDEDSSDVINSFVGSMSAQPQSSVPGLSPFSSVPENIAGGLGHDVESDVVAVAS AAFSAMNGTSTEQGILIDHDLLIKILSNPQLMEILVKDSAKQAAPFVASAPKITSSEPSHIYNDRTESNATASLSASEAVPFYSTGASVQAPPAASYMNI PPPAVSSSSSGVVKDVSYLKNLIQQHGGERQDRYGQQLRQDQLGFLKQRTKIMKPCAYFNSSRGCRNGANCAFQHDSSSSQERMGSEMQNSKRMKMDREI SS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10012404 [exp]	0	1
AT3G11320			Nucleotide-sugar transporter f...		Lus10014832 [exp]	11.9	0.8085
AT5G20730	ARF	MSG1, IAA21, BI...	MASSUGU 1, indole-3-acetic aci...		Lus10017681 [exp]	12.6	0.7897
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10008605 [exp]	15.8	0.8365
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10026568 [exp]	35.4	0.7722
AT3G11320			Nucleotide-sugar transporter f...		Lus10009878 [exp]	64.8	0.7391
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Lus10020188 [exp]	74.9	0.7265
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007500 [exp]	88.5	0.7553
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10039538 [exp]	157.2	0.7080
AT2G47960			unknown protein		Lus10018483 [exp]	173.1	0.7236
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10029240 [exp]	220.4	0.7084

Compare expression of checked genes

Lus10012404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.