Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39590 632 / 0 TLD-domain containing nucleolar protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024317 [exp] 992 / 0 AT5G39590 643 / 0.0 TLD-domain containing nucleolar protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G236400 [exp] 677 / 0 AT5G39590 639 / 0.0 TLD-domain containing nucleolar protein (.1) Potri.002G025032 [exp] 439 / 7e-153 AT5G39590 414 / 4e-143 TLD-domain containing nucleolar protein (.1) Potri.002G024966 [exp] 224 / 3e-70 AT5G39590 192 / 2e-58 TLD-domain containing nucleolar protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07534 [flax] [poplar] TLD TLD
Representative CDS sequence Show only first row Show all	>Lus10012406 pacid=23147302 polypeptide=Lus10012406 locus=Lus10012406.g ID=Lus10012406.BGIv1.0 annot-version=v1.0 ATGGGAGCGTCTTCATCGACTCCGCAGCCGGGTTCCAGCGAACAAAGAGAAGCGGAAAGCTTAGCGGCTTCAATCGGAGCACTTCCTACTCTCCAAACTT CATTTTCGAAGCTTGCTGATCCTCATACAAGTGCAATTCCTCTTGAATCGCTTCAGAAATGCTTCACTCTTAGTTACGGAAACCCAGTCAGTGAAGCAAC AGAAGGGTCCGATTCGTTTCTTGGATTATTGGATCATCTGGGGAAAACACTGGTGGATATGATTTTCGTGACAGAGAAGGGTGGACTCATCGATTGGATT GAGTTTGTGAAAGGTTACGTGAAATGCTGTGGAAGGATGACTAGTTCAATGTCCCTTAACGTTTTGTTGAGGCTATTTGCTGGGACATTGGCAAATTCCG GGAATCCTTCGAAATTGGAGTTTGAATCCATAGATGGTGATGGTAGTTACAAGGTAAATGGTTATCTTTTACCTGCTGATGTAATTTTCTTGCTATTCAT CTCATGGACTATGCTGTGGGATTCAAAAAGTTTGCGGTGTTCAGAAGACAAAGGAAGTTTGGTCCTTCCGGATGTTAGTCATTTGGTGCTGTCTGCTGTT GTTTCGTGTGTTGGCGATGGTCTTGATGGAGTAGACTTATGGGACTGTGACTTTACTGGTTTGGATGTTCAACTTCCTGCTGGGAAGTTCCTTGCTTGGG CACTGGCTACCATTCCTAGCCTGACAGACTGCCTGGCGCAATTCATCAGTGAGAGGCTCCGAAAATGCGCTACTTCAGAGGATGACTCTGCACCATGTAC CTCTGCGTCTGGAGGGTCTGCTTCAAGTGCAACAAATACTTATCTTTTAACTTGCGGGCGTGCATGGGCGATTTCTCTTTCTATGAAGAATACAATAAGC TTGGAAATCTTAGAACCATACCTCTGCAATGATGGTGATCGATTGGACGAACATGTTCTCTATCGGTCATGTATTCACGGGAAGGGCATGAATCGATTCT GGTCTAACGTTGAAGGTTATCATGGTCCGTTGCTTATCTTGGTTTCTGCTACTTCCGGAGAGGAGAGCTCAGTTACGAAGAAATGGGTTATAGGTGCTCT TACGCAACAAGGATTAGAGAACAAAGATCAATTCTATGGAACCGCTGCAACCCTATATGCTATCTGTCCGGTTTTCCATGCATTTCCATCTTCTGGAAAG GAGAAGAACTTTGTGTACAGCCACTTGCATCCTACTGGTAGAGCATATGATCCACATCCAAAGCCTGTTGGACTCGCATTTGGTGGGTCGATGGGGAACG AGAGGATATTTCTCGATGAAGACTTTGGTAGAGTAACTGTTCGTCATCATGCAGTTGACAAAACTTACCAACATGGTTGTCTATTCCCTAATCAGGGGTT TCTCCCAGTGGAAGCTTCGGTTTCAGAAGTTGAGGTGTGGGGACTTGGTGGGGAGTCAGCAAGGTCAGCACAAACATCATACAAAAAACGAGAGCAACTT TTCACTGAGCAAAGACGAAAGGTCGATCTGAAAACATTTGCCAACTGGGAAGATTCGCCGGAGAAGATGATGATGGATATGATGGGTAACCCCAACACAG TTAGAAGAGAAGACCGTTGA
AA sequence Show only first row Show all	>Lus10012406 pacid=23147302 polypeptide=Lus10012406 locus=Lus10012406.g ID=Lus10012406.BGIv1.0 annot-version=v1.0 MGASSSTPQPGSSEQREAESLAASIGALPTLQTSFSKLADPHTSAIPLESLQKCFTLSYGNPVSEATEGSDSFLGLLDHLGKTLVDMIFVTEKGGLIDWI EFVKGYVKCCGRMTSSMSLNVLLRLFAGTLANSGNPSKLEFESIDGDGSYKVNGYLLPADVIFLLFISWTMLWDSKSLRCSEDKGSLVLPDVSHLVLSAV VSCVGDGLDGVDLWDCDFTGLDVQLPAGKFLAWALATIPSLTDCLAQFISERLRKCATSEDDSAPCTSASGGSASSATNTYLLTCGRAWAISLSMKNTIS LEILEPYLCNDGDRLDEHVLYRSCIHGKGMNRFWSNVEGYHGPLLILVSATSGEESSVTKKWVIGALTQQGLENKDQFYGTAATLYAICPVFHAFPSSGK EKNFVYSHLHPTGRAYDPHPKPVGLAFGGSMGNERIFLDEDFGRVTVRHHAVDKTYQHGCLFPNQGFLPVEASVSEVEVWGLGGESARSAQTSYKKREQL FTEQRRKVDLKTFANWEDSPEKMMMDMMGNPNTVRREDR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39590			TLD-domain containing nucleola...		Lus10012406 [exp]	0	1
AT5G39590			TLD-domain containing nucleola...		Lus10024317 [exp]	1.0	0.8575
AT1G27180			disease resistance protein (TI...		Lus10000423 [exp]	7.3	0.7747
AT5G46030			unknown protein		Lus10025438 [exp]	8.7	0.7928
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10038818 [exp]	13.0	0.7370
AT1G22140			unknown protein		Lus10028077 [exp]	14.7	0.7111
AT1G19660			Wound-responsive family protei...		Lus10007390 [exp]	17.9	0.7454
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10031029 [exp]	18.0	0.7717
AT5G15460		MUB2	membrane-anchored ubiquitin-fo...		Lus10013190 [exp]	18.3	0.7281
AT5G10190			Major facilitator superfamily ...		Lus10027265 [exp]	19.4	0.7276
AT2G15220			Plant basic secretory protein ...		Lus10019799 [exp]	20.2	0.7049

Compare expression of checked genes

Lus10012406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.