Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005396 [exp] 315 / 4e-109 ND / Lus10007789 [exp] 316 / 4e-108 ND / Lus10023808 [exp] 222 / 3e-73 ND / Lus10005609 [exp] 224 / 1e-72 ND / Lus10006294 [exp] 217 / 7e-71 ND / Lus10002162 [exp] 217 / 2e-69 ND / Lus10021548 [exp] 173 / 6e-53 ND / Lus10005712 [exp] 174 / 2e-52 ND / Lus10027070 [exp] 143 / 1e-41 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012407 pacid=23147284 polypeptide=Lus10012407 locus=Lus10012407.g ID=Lus10012407.BGIv1.0 annot-version=v1.0 ATGCAGGGTTATAGTTGGAATGGAGAGTGGCAAGGTCCCTATGGTGCAAGTAATGAAAATGAAGGTTGGAGCTTATATCCTAACCAACATGAACATTATG AGCATCAAGGTCCACCAAAATACTACCAACCTAGATATGGAGGAGAACAACAACAATGGAGTAACTTTGGGCAAGGAACAATGCCAGGTTGGGGTGCACA CCAATCTCCCACAACTTTCTACCCAGACTCGCCTTCAATTTACTATCACCAAGACTCACCTTCAACCTACTCCCACCAAGACTACAATCAAGATCATCCA CCTTTCGAAGATCAATGCTCGAGACTCGATTATTCATATCAATCTTCTCCTTCCATGAACAAAAAACTCCTTATGCTACTTGAGGACAAATACACAAAGC ATGATCGTGGGGTAGAAGAGTCTGAAAGGGAGGATGATGGAGAGTGGAAGGAAGAAATACATGAAGATATGGCGCCTCTCATATTTTACATTACACCTCG CATTGAAAACCCCATCATTTGGCGTTTTCCTCGAGTCTTGGTTCCAATGAGACCAAACCAGACCCTTCAAGACTCATGTTTGGTTTTGAAGTACCTATGT GAGGAAACTCATAAGGAATACTTCCCACACCGGTCTAGAACGGACTCCTCAATCTCGGAGCCACCCTTGGAGGACCTCACTGACCGCCCAAGTACAACCA TTAGCTTGGGGAGAATTGTAGAGCTCGATTTTCACTCACCAGCCTACCTCTACCCTCCTCAAGCATACACATCCACAAAGAGGAAGTCGCAACAAGGAAA GAGTTGGTGCGCACAACCGCTTCGTCTCCTCCATCTCTACCTAAGGGTGCTACTTGGCATTCAACTCCAATCCTTGAAGAAGCTAATGGAATTCAAGGAG GTTCTAAGTTGGGGAGCGTAA
AA sequence Show only first row Show all	>Lus10012407 pacid=23147284 polypeptide=Lus10012407 locus=Lus10012407.g ID=Lus10012407.BGIv1.0 annot-version=v1.0 MQGYSWNGEWQGPYGASNENEGWSLYPNQHEHYEHQGPPKYYQPRYGGEQQQWSNFGQGTMPGWGAHQSPTTFYPDSPSIYYHQDSPSTYSHQDYNQDHP PFEDQCSRLDYSYQSSPSMNKKLLMLLEDKYTKHDRGVEESEREDDGEWKEEIHEDMAPLIFYITPRIENPIIWRFPRVLVPMRPNQTLQDSCLVLKYLC EETHKEYFPHRSRTDSSISEPPLEDLTDRPSTTISLGRIVELDFHSPAYLYPPQAYTSTKRKSQQGKSWCAQPLRLLHLYLRVLLGIQLQSLKKLMEFKE VLSWGA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012407 [exp]	0	1

Compare expression of checked genes

Lus10012407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.