Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17430 223 / 1e-70 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 207 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 160 / 2e-46 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 158 / 1e-45 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 157 / 2e-45 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 155 / 1e-44 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 153 / 1e-43 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 131 / 1e-35 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 129 / 1e-34 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 45 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019631 [exp] 260 / 6e-85 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 213 / 8e-67 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10023147 [exp] 165 / 4e-48 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 162 / 2e-47 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 153 / 8e-44 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 137 / 9e-38 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10041747 [exp] 132 / 1e-35 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10036159 [exp] 91 / 2e-21 AT5G09430 308 / 3e-106 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 90 / 3e-20 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168600 [exp] 263 / 5e-86 AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 179 / 4e-54 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G097400 [exp] 160 / 1e-46 AT1G78210 407 / 1e-143 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G074066 [exp] 159 / 3e-46 AT4G39955 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 159 / 4e-46 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G094700 [exp] 157 / 2e-45 AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 123 / 2e-32 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155800 [exp] 120 / 2e-31 AT2G18360 340 / 3e-117 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G024400 [exp] 117 / 2e-30 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116900 [exp] 114 / 4e-29 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10012409 pacid=23147285 polypeptide=Lus10012409 locus=Lus10012409.g ID=Lus10012409.BGIv1.0 annot-version=v1.0 ATGGAATGGATAGTGGATTACCTCCGGCGTTCAATCCAGTCGGCAATCAGCTACATCCTCACTATTATTATTATTAGTTTGAAGGAAAAAGTGGGATCCA CCAGCTTCTCCATCGCCGACACCTTACTTTCACTCTATTTCCGCTTCTGCGGTCTCTCCCCTATCTCGATTCACTTAGACGACGACGACGACGATGACCA TACAACCCTCCTCCATTTCTGGGCGGGACCTCGGAACTCCAAGAGGCCTAACTTGGTCATGATCCACGGCAAATGCGGCGATTCCCGCTGGCAATTCATG TACCAGGTAGGCAATCTATCCCGGAAATTCGAGCTCTACATCCCAGACCTGCTCTTCTTTGGCAAGTCCTACACTAGCAGTGAAGAAAGGTCTGAAATTT ACCAAGCCAAGTGCGTGGCTGCCGGACTCAACAGGTTGGGAGTTGACAGGTACTCCGTCTATGGTATCAGCTATGGTGGTTATGTTGGGTATCATTTAGC TTACATGGTTGCCGAGAAAGTAGACAAGGTTGTGCTTATGAGCACTGGCGTAGGTTGCAGCAACCTTGACAAACAAGAAATGGTTAGGAAGCTTGGCATG GATCCCAAACACCTTCTCGTTCCTTCAACTCCTTCTCATCTCAGGCAGCTCTTCGTTCGGTCTATCTACAGGGGCGGTTATATAAACTTCGTTCCTGATT CCTTCCTTCAGGCTTATCTCAATGCACTAAGCATTAACAACAGGAAGGAAAAGATGGAGTTGGTAGATCATTTGTTGGGCAACAACAACAACAACTCTGC TGATGAAAGCCTTCCTGTCCTTGATCAGGAGACGCTTCTGATATGGGGAGACAAGGATAATGTGTTCCCTCTCAACCTTGCTTACCAGCTGCAGAGGCAT TTAGGGTCAAAAGCAAGAGTTGCCATAGTTAAAGACACGGGACATGCGGTCAACATGGACGCCCCAACTGAAGTCAATACCCTCATTTCTTCTTTTATTT TGGGCGTAGCTCATACTCACTGTACCTGA
AA sequence Show only first row Show all	>Lus10012409 pacid=23147285 polypeptide=Lus10012409 locus=Lus10012409.g ID=Lus10012409.BGIv1.0 annot-version=v1.0 MEWIVDYLRRSIQSAISYILTIIIISLKEKVGSTSFSIADTLLSLYFRFCGLSPISIHLDDDDDDDHTTLLHFWAGPRNSKRPNLVMIHGKCGDSRWQFM YQVGNLSRKFELYIPDLLFFGKSYTSSEERSEIYQAKCVAAGLNRLGVDRYSVYGISYGGYVGYHLAYMVAEKVDKVVLMSTGVGCSNLDKQEMVRKLGM DPKHLLVPSTPSHLRQLFVRSIYRGGYINFVPDSFLQAYLNALSINNRKEKMELVDHLLGNNNNNSADESLPVLDQETLLIWGDKDNVFPLNLAYQLQRH LGSKARVAIVKDTGHAVNMDAPTEVNTLISSFILGVAHTHCT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17430			alpha/beta-Hydrolases superfam...		Lus10012409 [exp]	0	1
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10028191 [exp]	2.0	0.8559
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	3.9	0.8569
					Lus10025143 [exp]	5.1	0.8252
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10028565 [exp]	5.6	0.8603
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10010262 [exp]	6.2	0.8598
AT5G36930			Disease resistance protein (TI...		Lus10004719 [exp]	7.0	0.8414
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10015154 [exp]	7.1	0.8304
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10027037 [exp]	10.4	0.8295
AT5G02440			unknown protein		Lus10024400 [exp]	12.5	0.8482
AT5G44005			unknown protein		Lus10003609 [exp]	14.3	0.8153

Compare expression of checked genes

Lus10012409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.