Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54140 227 / 1e-76 TAF9, TAFII21 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011251 [exp] 314 / 5e-111 AT1G54140 242 / 2e-82 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1) Lus10022103 [exp] 132 / 2e-40 AT1G54140 112 / 2e-33 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1) Lus10001863 [exp] 120 / 4e-36 AT1G54140 106 / 7e-31 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168300 [exp] 255 / 5e-88 AT1G54140 262 / 1e-90 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF02291 [flax] [poplar] TFIID-31kDa Transcription initiation factor IID, 31kD subunit
Representative CDS sequence Show only first row Show all	>Lus10012411 pacid=23160974 polypeptide=Lus10012411 locus=Lus10012411.g ID=Lus10012411.BGIv1.0 annot-version=v1.0 ATGGCTGAAGGAGATGAGCAAATGCCAAGAGATGCGAAGATTGTCAAATCACTCCTGAAATCGATGGGTGTTGAAGACTACGAACCACGTGTTATCCACC AGTTCCTGGAGTTGTGGTATCGTTACGCTGTGGATGTGTTGACAGATGCTCAAGTTTACTCAGACCATGCTGGCAAGTCTACTATCGACACTGAAGATGT CAAGCTTGCCATTCAATCCAAAGTAAACTTCAGCTTCTCACAACCCCCACCAAGAGAGGTTTTACTGGAGTTGGCGAGGAACAGGAACAAAATCCCATTG CCCAAGTCTGCCCCTGGACCGGGTACTCCTCTACCACCTGATCAGGACACATTGATCAATCCGAATTACCAATTAGCTATGCCAAGGAAACAGCTTTCCC AAGTAGAAGAAATGGAAGAGGATGAAGAAAGTGCTGCTGATCCTTTGAATCCCTTACAGGAACCAAATCCTGATACGCCCCAACAGCAGCAAACCCCTCA GAGAGTCTCGTTTCCTCTCGCCAAAAGGCCCAAGTGA
AA sequence Show only first row Show all	>Lus10012411 pacid=23160974 polypeptide=Lus10012411 locus=Lus10012411.g ID=Lus10012411.BGIv1.0 annot-version=v1.0 MAEGDEQMPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYAVDVLTDAQVYSDHAGKSTIDTEDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPL PKSAPGPGTPLPPDQDTLINPNYQLAMPRKQLSQVEEMEEDEESAADPLNPLQEPNPDTPQQQQTPQRVSFPLAKRPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10012411 [exp]	0	1
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10001082 [exp]	2.4	0.9461
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10030046 [exp]	2.4	0.9274
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10019706 [exp]	3.5	0.9334
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10019137 [exp]	5.3	0.9273
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10040095 [exp]	6.0	0.9155
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	8.5	0.9177
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10028892 [exp]	8.7	0.9240
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10041105 [exp]	10.2	0.8995
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10028977 [exp]	10.6	0.9045
AT2G20820			unknown protein		Lus10031625 [exp]	12.1	0.9176

Compare expression of checked genes

Lus10012411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.