Plant FIBer expression Database

Lus10012414 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25660 169 / 4e-48 EMB2410 embryo defective 2410 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001860
[exp]
208 / 8e-62 AT2G25660 1582 / 0.0 embryo defective 2410 (.1)
Lus10022111
[exp]
48 / 7e-07 AT2G25660 264 / 2e-82 embryo defective 2410 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G034700
[exp]
189 / 5e-55 AT2G25660 2951 / 0.0 embryo defective 2410 (.1)
PFAM info
Representative CDS sequence
>Lus10012414 pacid=23160980 polypeptide=Lus10012414 locus=Lus10012414.g ID=Lus10012414.BGIv1.0 annot-version=v1.0
ATGATGCTGTTGACAGCTTTATCCCCATATCCAAATTGGGTTCGTGGCAATGCTGACATTATGTTTGAGGTCAGAGGAACTGTTGAGCAACCTGTGGTTG
ATGGGTTTGCTTCATTCCGTAGGGCATCTATATCTTCACCCGTTCTGAAAAAACCACTCACAAATTTTTGTGGTTCAGTAGATGTGAAATCAAATCGACT
TTGCATCACTTCATTGGAGAGCAGGGTTAGCAGGAAAGGCAAGCTGTTTATTCAAGGAAATCTAACCCTCCGAACAAGTGAAGCAATTGATCATAAAATT
GACTTGAAATGTGAAGTCCTGGAAGTCCGAGCAAAGAGCATCTTAACGCTGAAACGGGAGCATCTCAATTTCGGAAAATTTGAGCCTGACCGTGGTTTAG
ATCCTATGCTAGACTTGGTTTTGGTTGAATCAGAGTGGCAATTCAGAATCCATAGCAGAGCCAGCAATTGGCATGACAAGCTGGTGGTAACCTCCACCCG
ATCCATGGAGCAAGACGCACTCTCCCCTACGGAGGAAAGGGAAAACTTGGGCATGGTTAATCCTTTGAAGTCTCTAGCCGGTACTATATCCTTTGGTGCG
GAAGTCAAGGTCCAGCTCGAGAAACGCCTGACTCGGAGGATGCTGATTGTGTTGGTCCCGGATAATTGA
AA sequence
>Lus10012414 pacid=23160980 polypeptide=Lus10012414 locus=Lus10012414.g ID=Lus10012414.BGIv1.0 annot-version=v1.0
MMLLTALSPYPNWVRGNADIMFEVRGTVEQPVVDGFASFRRASISSPVLKKPLTNFCGSVDVKSNRLCITSLESRVSRKGKLFIQGNLTLRTSEAIDHKI
DLKCEVLEVRAKSILTLKREHLNFGKFEPDRGLDPMLDLVLVESEWQFRIHSRASNWHDKLVVTSTRSMEQDALSPTEERENLGMVNPLKSLAGTISFGA
EVKVQLEKRLTRRMLIVLVPDN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G25660 EMB2410 embryo defective 2410 (.1) Lus10012414
[exp]
0 1
Lus10013650
[exp]
2.2 0.8933
Lus10013649
[exp]
2.8 0.8363
Lus10028109
[exp]
5.2 0.8229
AT2G24520 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase... Lus10020148
[exp]
5.3 0.7921
AT2G25660 EMB2410 embryo defective 2410 (.1) Lus10012415
[exp]
5.6 0.7152
AT3G55960 Haloacid dehalogenase-like hyd... Lus10040202
[exp]
6.0 0.7928
Lus10008904
[exp]
6.9 0.7915
Lus10039764
[exp]
7.5 0.8084
AT5G11100 SYT4, NTMCTYPE2... synaptotagmin 4, Calcium-depen... Lus10041034
[exp]
8.5 0.7886
AT2G40190 LEW3 LEAF WILTING 3, UDP-Glycosyltr... Lus10010207
[exp]
9.5 0.6108

Lus10012414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.