Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25660 349 / 3e-106 EMB2410 embryo defective 2410 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001860 [exp] 459 / 4e-151 AT2G25660 1582 / 0.0 embryo defective 2410 (.1) Lus10001859 [exp] 291 / 3e-87 AT2G25660 1263 / 0.0 embryo defective 2410 (.1) Lus10028090 [exp] 105 / 4e-26 ND / Lus10022121 [exp] 71 / 3e-14 ND / Lus10023790 [exp] 60 / 7e-10 ND / Lus10024537 [exp] 57 / 8e-09 ND / Lus10005727 [exp] 42 / 0.0002 ND / Lus10003414 [exp] 0 / 1 ND / Lus10026843 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034700 [exp] 386 / 5e-119 AT2G25660 2951 / 0.0 embryo defective 2410 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012415 pacid=23160958 polypeptide=Lus10012415 locus=Lus10012415.g ID=Lus10012415.BGIv1.0 annot-version=v1.0 ATGCTTGTGTTCGATTCAGTTGAGGAGTTGAACGACGGTGAGCTAGCTTGCCTTGCCATGGTTTCAGGACTCCCCATCCATGATGTTCAGGGTTTTTTGT GTAGCATTGGAAAAGACGCGCCTCCATTTACAGCTGGTGTCTCCAAGGCGATGCATATCCACAAACTAATGCTTTGCCTCATCCATCTCTTTGCTCGCCA CGGTATCTCATCACATCTTCAACTGCTTGGAGAAGAAGATCGACATGCATTTGGGAGACTTGGTTCTTACTCTCTTCAAGTAATTGAAGAGCTACTCCTT GCATGCAGTACTGTTCAGAAGAGGGGTGAGGTGGATGATAGGGCAATGGACGTGAATTTTTCTGGAAATTTGTCCTTTGATAAAATTATGGATCGTTATA TACCAGGTTATCTTCCAGTTATATCACTGAAGTTAGATGACCTAACTGGAGAAGCAAAGCTTTCAGGATCCCTTTTGAGACCGAGATTCGACATCAAATG GATTGCACCAAAAGCTGAAGGGTCATTTGTTGATGCTAGAGGGGAAATTATCTGCGAATGCGTGGGTATGAGGTTTTCAGCTGTCTCTTCTTATCCATTT GATTCTCCAAGACCTACACATTTGAAAGCTACAGGCAAGATAAAATTTCAGGGGAAGATTGTGAAGCCTTTCACTCCTGCCGAGGAACATCTTCCTACTG AGAAGAACGTGCATATAAATGTAGGACGACTCGGAGAATGTCTTGCTGGGGAGGTCTCAGTGTCGAGTTTGAGAATAAATCAGTTGATGTTAGCTCCACA GCTCTCTGGTCAGTTGAGCATTTCTAGTGACCATATCAAGGAAATCGAGGGGCATCATACTGCCCCCAGCGAAATTATTCCTGAGGAGATAAGTCTTCCA GGACTTGCTGAACTCAAAGGTCGTTGGCAAGGTTCTCTCGAGGCAATGGCAGGATTTGACTTTCGCGGGGAGGACTGGGAGTGGGGAAATTACAACACTC AGCGGGTTCTAGCAGTTGGTGCATACAGCAACAATAAAGGGTTACACCTTGAAAGGTTGTTTATTCAAAAAGATAATGCTACAGTACACGCTGATGGGAC TTTGTTAGGGCCAAAAACCAATCTGCATTTTGCTGTCCTGAACTTTCCTCTCAGTCTAGTTCCTACTTTGGTTCAGGTGATGGTGGCCTCAGCATCAGAC ACTGTTCATTCATTGAGACAACTCTTGGCTCCAATCCGAGGTATACTGCACATGGAAGGAGATCTGAGAGGAAGTTTGTCAAAACCAGAATGTGATGTAC AAGTAAGGCTCTTAGATGGTGCTACTAGGGGCATTGATTTGGGGCCTGCAGAAATTGTTGCTTCTCTAACTTCAACTAGCCGATTCTTATTCAATGCCAA ATTTGAACCGATTGTCCAAAATGGTCATGTTCATATACAAGGAAATATACCTCTTACCTTTGTGCAAAATAACCTGGACGAAGAAGATTCAGATACAGAC AACAGTGGAGCAACTTGGTTTCCTGGTTGGTCCAGTGAAAAGAAATTACTCATTGATAAAGTGAAGATGGTTGGAATTCGCAGTTAG
AA sequence Show only first row Show all	>Lus10012415 pacid=23160958 polypeptide=Lus10012415 locus=Lus10012415.g ID=Lus10012415.BGIv1.0 annot-version=v1.0 MLVFDSVEELNDGELACLAMVSGLPIHDVQGFLCSIGKDAPPFTAGVSKAMHIHKLMLCLIHLFARHGISSHLQLLGEEDRHAFGRLGSYSLQVIEELLL ACSTVQKRGEVDDRAMDVNFSGNLSFDKIMDRYIPGYLPVISLKLDDLTGEAKLSGSLLRPRFDIKWIAPKAEGSFVDARGEIICECVGMRFSAVSSYPF DSPRPTHLKATGKIKFQGKIVKPFTPAEEHLPTEKNVHINVGRLGECLAGEVSVSSLRINQLMLAPQLSGQLSISSDHIKEIEGHHTAPSEIIPEEISLP GLAELKGRWQGSLEAMAGFDFRGEDWEWGNYNTQRVLAVGAYSNNKGLHLERLFIQKDNATVHADGTLLGPKTNLHFAVLNFPLSLVPTLVQVMVASASD TVHSLRQLLAPIRGILHMEGDLRGSLSKPECDVQVRLLDGATRGIDLGPAEIVASLTSTSRFLFNAKFEPIVQNGHVHIQGNIPLTFVQNNLDEEDSDTD NSGATWFPGWSSEKKLLIDKVKMVGIRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012415 [exp]	0	1
AT5G66420			unknown protein		Lus10014286 [exp]	4.2	0.6426
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10034749 [exp]	4.9	0.7003
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012414 [exp]	5.6	0.7152
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Lus10040144 [exp]	7.7	0.6525
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10038669 [exp]	9.8	0.5913
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10038672 [exp]	19.2	0.6334
					Lus10024480 [exp]	19.2	0.6470
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Lus10016093 [exp]	23.4	0.6274
					Lus10013650 [exp]	24.5	0.6374
AT3G28390		ABCB18, PGP18	ATP-binding cassette B18, P-gl...		Lus10043069 [exp]	26.9	0.5563

Compare expression of checked genes

Lus10012415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.