Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11460 140 / 4e-38 Protein of unknown function (DUF581) (.1) AT2G25690 133 / 2e-35 Protein of unknown function (DUF581) (.1), Protein of unknown function (DUF581) (.2) AT3G22550 79 / 2e-16 Protein of unknown function (DUF581) (.1) AT3G63210 79 / 2e-16 MARD1 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) AT1G74940 61 / 1e-10 Protein of unknown function (DUF581) (.1) AT1G22160 59 / 2e-10 Protein of unknown function (DUF581) (.1) AT1G53903 58 / 3e-10 Protein of unknown function (DUF581) (.1) AT1G53885 58 / 3e-10 Protein of unknown function (DUF581) (.1) AT1G78020 58 / 6e-10 Protein of unknown function (DUF581) (.1) AT5G49120 57 / 1e-09 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007668 [exp] 184 / 2e-57 AT3G22550 43 / 6e-06 Protein of unknown function (DUF581) (.1) Lus10025770 [exp] 100 / 5e-24 AT3G22550 100 / 2e-24 Protein of unknown function (DUF581) (.1) Lus10022060 [exp] 100 / 8e-24 AT3G63210 133 / 1e-37 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) Lus10042606 [exp] 98 / 4e-23 AT3G22550 139 / 1e-39 Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 98 / 5e-23 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10006102 [exp] 98 / 8e-23 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1) Lus10035894 [exp] 96 / 2e-22 AT3G22550 98 / 1e-23 Protein of unknown function (DUF581) (.1) Lus10011923 [exp] 56 / 5e-09 AT1G74940 81 / 3e-19 Protein of unknown function (DUF581) (.1) Lus10027642 [exp] 55 / 9e-09 AT1G74940 89 / 6e-22 Protein of unknown function (DUF581) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G245200 [exp] 358 / 2e-121 AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1) Potri.018G035400 [exp] 332 / 3e-111 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.001G179700 [exp] 186 / 3e-55 AT5G11460 141 / 1e-38 Protein of unknown function (DUF581) (.1) Potri.010G085700 [exp] 127 / 2e-33 AT3G22550 216 / 8e-69 Protein of unknown function (DUF581) (.1) Potri.008G154600 [exp] 116 / 1e-29 AT3G22550 219 / 2e-70 Protein of unknown function (DUF581) (.1) Potri.005G211500 [exp] 104 / 3e-25 AT3G22550 182 / 4e-56 Protein of unknown function (DUF581) (.1) Potri.002G050800 [exp] 99 / 4e-23 AT3G22550 174 / 3e-53 Protein of unknown function (DUF581) (.1) Potri.006G139200 [exp] 72 / 3e-14 AT5G20700 139 / 2e-40 Protein of unknown function (DUF581) (.1) Potri.005G078600 [exp] 62 / 3e-11 AT1G78020 106 / 3e-29 Protein of unknown function (DUF581) (.1) Potri.003G071900 [exp] 61 / 4e-11 AT1G53903 108 / 4e-31 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04570 [flax] [poplar] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Lus10012417 pacid=23160975 polypeptide=Lus10012417 locus=Lus10012417.g ID=Lus10012417.BGIv1.0 annot-version=v1.0 ATGTTGAGGAAAAGAAGCAGGTCAGTCCAGAAAGATCAACCTGAAATGGGTCTTCTGTTAAAAGTAGATGATTCTGCTGAAAGTCACAGGAGAAGTTGTT TGTTCCCTGTACCTAGACTGTTTGTTGGATTTAGCTCTAAAGGATTGTCAGATTCTGATTCAGTCAAGAGTCCAACATCACCTCTAGATCTTAAGGGGTT CTCAAATGTAGTAGGAAACCCCCCTCCTTATGCCTATCCAAGGTCATCCTACCAGAAGAGCTGGGATCGTAGTAGACTCGGCTTAAGCATTGTAGATTGC CTTGATGATGATGATCTTGCTAAAAGCTCTGACATAGTTCCTCGCTCTTTCGAGAGTAAGAGTAAGAACATTCTCTTTGGCCCAGGGGTGAGAAGCAAAC CATCAAATTGTCAAGATCATACCAATGATTCTTTTGAGGCAACTAACTCCTTGCCCAAAAATTTTGCTATACTTCCTCGTAATGCCCACACCAAATCACC CCTTCAAAAGGGAAGCTCTGATGTACTTTTTGAAATTGGAGTATCTCCAGATGATCATGGTCCTGAACTCTTTGGAAGGATTAGGTCTCACTCATTAGAC TCCTCCTATAGGTCTTTTTCAAACATGCCTGCTATGAGTAGCCAGGACTCCAAACCCAGTCCTGGAACTTCTCGCTTGTCTAACTTATCAGGTGTGAACT TGGGTTCTGCGCTACCCTTGCCTATTATTGCTACCTCTGGCATTAACACTCTATCTGTCAATGAGATTGAGCTCTCAGAGGTTTATACATGTATCATTTC ACATGGCTCCAACCCCAAAAAGACTCATATATATGGTGACTGTGTTTTAGAATGTCACTCAGATGAGTTGAGCAATTTAGGCAACAAGGGAGGGAAAGAA ATTGTACTCCCCTCCTGGAATGCCATGATGCACAGCGTTGCCCCAGCAGCTTCATTAGCCCCTCATCATTTCTTGAGCTTCTGTCACTATTGCAACAAGA AACTAGAAGCGGGGAAAGACATCTATATTTACAGAGGTGAGAAAGCCTTCTGTAGTTTAAGTTGTCGCTCACATGAGATAATGATTGATGAGGAGTTTGA AGACGAGAACACAATGAATGATTCTGGCGGTGACATGAGTGAGGTATTGGAGAAAACCATGAATAAATCTTGGGAAGACATAGAAGAAGACAATAATGAA CTGAGTGAATCAAGCATTCTCTATGCGCCATAA
AA sequence Show only first row Show all	>Lus10012417 pacid=23160975 polypeptide=Lus10012417 locus=Lus10012417.g ID=Lus10012417.BGIv1.0 annot-version=v1.0 MLRKRSRSVQKDQPEMGLLLKVDDSAESHRRSCLFPVPRLFVGFSSKGLSDSDSVKSPTSPLDLKGFSNVVGNPPPYAYPRSSYQKSWDRSRLGLSIVDC LDDDDLAKSSDIVPRSFESKSKNILFGPGVRSKPSNCQDHTNDSFEATNSLPKNFAILPRNAHTKSPLQKGSSDVLFEIGVSPDDHGPELFGRIRSHSLD SSYRSFSNMPAMSSQDSKPSPGTSRLSNLSGVNLGSALPLPIIATSGINTLSVNEIELSEVYTCIISHGSNPKKTHIYGDCVLECHSDELSNLGNKGGKE IVLPSWNAMMHSVAPAASLAPHHFLSFCHYCNKKLEAGKDIYIYRGEKAFCSLSCRSHEIMIDEEFEDENTMNDSGGDMSEVLEKTMNKSWEDIEEDNNE LSESSILYAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22550			Protein of unknown function (D...		Lus10012417 [exp]	0	1
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10013124 [exp]	3.3	0.8767
AT1G50660			unknown protein		Lus10040076 [exp]	5.5	0.8597
AT1G73930			unknown protein		Lus10042970 [exp]	6.0	0.8498
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	6.0	0.8720
AT5G62170			unknown protein		Lus10031666 [exp]	11.7	0.8692
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10030674 [exp]	16.7	0.8351
AT3G01810			unknown protein		Lus10041590 [exp]	17.0	0.8433
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10022308 [exp]	19.1	0.8296
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10012264 [exp]	20.0	0.8179
AT5G26910			unknown protein		Lus10037725 [exp]	20.7	0.8750

Compare expression of checked genes

Lus10012417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.