Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27230 320 / 7e-109 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G40830 305 / 3e-103 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G05390 185 / 7e-56 unknown protein AT1G29790 178 / 5e-54 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G01240 178 / 8e-52 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G23300 48 / 3e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G51070 47 / 6e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 47 / 9e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G34300 46 / 1e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G64030 46 / 1e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024318 [exp] 463 / 3e-165 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024319 [exp] 358 / 5e-127 AT3G27230 268 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10034506 [exp] 355 / 1e-122 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033164 [exp] 353 / 9e-120 AT3G27230 451 / 3e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10007385 [exp] 208 / 3e-65 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020803 [exp] 206 / 2e-64 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007588 [exp] 203 / 4e-63 AT5G40830 232 / 6e-72 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10015264 [exp] 182 / 2e-55 AT1G29790 504 / 1e-179 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010138 [exp] 181 / 4e-54 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G236600 [exp] 355 / 7e-123 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G024800 [exp] 352 / 2e-121 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G135100 [exp] 202 / 4e-63 AT3G05390 278 / 3e-89 unknown protein Potri.004G083800 [exp] 200 / 4e-62 AT3G05390 278 / 3e-89 unknown protein Potri.011G079000 [exp] 185 / 8e-57 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.013G019400 [exp] 186 / 3e-56 AT3G05390 753 / 0.0 unknown protein Potri.004G231100 [exp] 185 / 5e-56 AT3G05390 287 / 2e-92 unknown protein Potri.001G352700 [exp] 183 / 5e-56 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G165300 [exp] 185 / 7e-56 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.004G116900 [exp] 180 / 8e-54 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10012420 pacid=23160982 polypeptide=Lus10012420 locus=Lus10012420.g ID=Lus10012420.BGIv1.0 annot-version=v1.0 ATGGTGGCATCCGTTGGAAATTTTTGTGACAAATCTGCTGATTTGCTCTCTCAGTATATGAACTATAAGGTTTCTGGAGCTTGCCCTGATGACTGGAGCC TAGCCCAGAAGCTGATTCTTCGAGGGTGTGAGCCTTTGCCCAGGAGGAGATGCTTTGCCAACTCAATTCCTAAGAAGAAACTACTAAGTGAAGAATTTGA TTTAGGGAATGAGAATCATACGTACGTTAAGGGTAGAGGGAAGAATGATCTCTTGGCTGATGATGTTTTGGGATTGGCAAGTGGTGGGATTAGGATAGGG CTTGACATTGGTACTGCTTCTGGTGGGACATTTGCTGCTAGAATGGGTCAAAGGAATGTCACTGTGATTACAAACACACTGAATTTGGATGCTCCTTTTA ATGAGTTTGTTGCTGCCAGAGGCCTATTTCCTCTTTACTTGAGCTTGGACCATAGGTTTCCCTTCTACGACAATGTCTTCGATTTAATTCATGCTGCTGC ATTTTATTTCGGGACCAAGCCTGAGAAGCTAGAGTTCTTGATATTTGACATTGATCGGATACTGAGAGCTGGGGGCTTGTTTTGGCTGGATAACTTATAC TGTGCCAATGATGACAAGAAATCGGCTTTGACTCATTTGATTCAGAAATTTGGGTACAAGAAATTGAAATGGGTTGTGGGCGATAAGCTTGATTCAACTG AGAAACCCCAAGTTTCATTATCTGCAGTGCTTAAATAA
AA sequence Show only first row Show all	>Lus10012420 pacid=23160982 polypeptide=Lus10012420 locus=Lus10012420.g ID=Lus10012420.BGIv1.0 annot-version=v1.0 MVASVGNFCDKSADLLSQYMNYKVSGACPDDWSLAQKLILRGCEPLPRRRCFANSIPKKKLLSEEFDLGNENHTYVKGRGKNDLLADDVLGLASGGIRIG LDIGTASGGTFAARMGQRNVTVITNTLNLDAPFNEFVAARGLFPLYLSLDHRFPFYDNVFDLIHAAAFYFGTKPEKLEFLIFDIDRILRAGGLFWLDNLY CANDDKKSALTHLIQKFGYKKLKWVVGDKLDSTEKPQVSLSAVLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10012420 [exp]	0	1
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024318 [exp]	1.0	0.9047
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024319 [exp]	2.0	0.8546
AT5G11600			unknown protein		Lus10002800 [exp]	2.8	0.7318
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10039077 [exp]	8.5	0.7022
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Lus10019546 [exp]	12.8	0.6755
AT4G14147		ARPC4	protein binding (.1.2)		Lus10027499 [exp]	13.6	0.7132
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10029398 [exp]	21.7	0.7064
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10013513 [exp]	26.5	0.7459
AT4G30993			Calcineurin-like metallo-phosp...		Lus10040035 [exp]	35.4	0.6890
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10015320 [exp]	51.4	0.6517

Compare expression of checked genes

Lus10012420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.