Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19850 1021 / 0 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G19220 514 / 4e-166 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G20730 508 / 4e-163 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G30330 497 / 3e-161 ARF ARF6 auxin response factor 6 (.1.2) AT5G37020 484 / 2e-158 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT5G62000 379 / 3e-117 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 351 / 5e-109 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT2G46530 341 / 8e-106 ARF ARF11 auxin response factor 11 (.1.2.3) AT5G60450 342 / 5e-104 ARF ARF4 auxin response factor 4 (.1) AT4G23980 335 / 2e-103 ARF ARF9 auxin response factor 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024320 [exp] 944 / 0 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10031354 [exp] 501 / 2e-164 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 500 / 3e-164 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10027600 [exp] 503 / 4e-162 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10033598 [exp] 491 / 7e-161 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10007386 [exp] 489 / 2e-159 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 489 / 7e-159 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10017641 [exp] 489 / 3e-157 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10033635 [exp] 478 / 3e-155 AT5G20730 741 / 0.0 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G236700 [exp] 1240 / 0 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.002G024700 [exp] 1211 / 0 AT1G19850 1032 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.005G207700 [exp] 512 / 2e-167 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.006G138500 [exp] 518 / 9e-167 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.002G055000 [exp] 505 / 3e-164 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2) Potri.004G078200 [exp] 500 / 8e-164 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.017G141000 [exp] 498 / 4e-163 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.018G063000 [exp] 502 / 2e-161 AT1G19220 735 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G077800 [exp] 500 / 1e-160 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.011G091900 [exp] 494 / 1e-160 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family CL0072 [flax] [poplar] PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10012421 pacid=23160977 polypeptide=Lus10012421 locus=Lus10012421.g ID=Lus10012421.BGIv1.0 annot-version=v1.0 ATGGCTTCTGTAGAAGAAAAAGGTAAAGCCGGAGTTGGCTTGGTCGGTGCCGGGGCACAAATTCCGGCGACCTCGACTCTTCTGGATGAAATGAAGCTGT TGAAGGAAATCCAAGATCACTCTGCTGCAGCTGGTAGCCGCAAAGCGATAAACTCAGAGCTTTGGTACGCATGTGCTGGCCCACTGGCTTCATTGCCTCA GGTTGGAAGCCTTGTGTATTACTTCCCTCAGGGTCACAGCGAGCAGGTTGCAGTTTCAACCAAGAGAAATGCAACTTCACAGATCCCCAACTACCCAAAT CTTCCTTCTCAGTTACTCTGCCAGGTTCACAATGTTACTCTCCATGCAGACAGAGATACGGATGAAATCTATGCGCAAATGAGTCTTCAACCAGTGAACT CTGATAAAGACATATTTCCTGTTCCGGACTTCGGATTGAAGCTCAGCAGGCATCCTGCCGAGTTTTTCTGCAAAACATTGACTGCTAGTGATACAAGCAC TCATGGTGGCTTCTCTGTGCCACGGAGGGCTGCAGAAAAGCTATTTCCTCAGCTGGATTACACAATGCAACCTCCATCTCAAGAGCTTATTGTCAGAGAC TTGCATGACAATGCCTGGACCTTTCGCCATATCTACCGAGGACAGCCAAAGAGACATCTTCTCACAACCGGGTGGAGTTTGTTTGTTGGGTCCAAAAGGC TTAAAGCAGGAGATTCTGTCTTGTTCATCAGGGATGAGAAGTCACAGTTACTGGTGGGTATCAGGCGTGCAAATCGTCAACAGTCTACATTGCCGTCATC TGTTCTATCTGCAGATAGCATGCACATTGGTGTCCTTGCTGCAGCAGCTCATGCTGCCGCAAGCAGGAGTTCTTTCACCATATTTTACAATCCAAGGGCA TGTCCTTCAGAGTTTGTCATTCCTTTAGCCAAGTACAGGAAAGCTGTGTGTGGGACTCAAGTTGCGGTTGGAATGAGATTTGGGATGATGTTTGAGACAG AGGAGTCAGCCAAACGCAGATATATGGGCACGATAGTTGGCGTTAGTGACCTGGATCCATTGAGGTGGCCTGGTTCCAAATGGAGAAATCTCCAGGTGGA GTGGGATGAGCCAGGGTGTTCTGACAAGCCAAATAGAGTTAGTTCTTGGGATGTAGAAACTCCTGAAAGCCTCTTCATTTTCCCTTCTCTAACTTCAGGA CTCAAGCGGCCTATGCATAGTGGTTATTTAGGAGGAGAAACTGAATGGGGGAACTTGATTAAAAGACCTCTTGTCTGGCTTCCTGATGGAGGAAATACTA GTCTTGCTTACCCACCATTCTCGGATTCGGGATCTGATCGATTGCTCAACATGCTAATGAAACCACCAGCTTTTAACTATCCTGGATTATCTTCTCCTTC CTTCCAAGATATCTCTGCTGCCAAAGGACCGTCAGTGGAAGATGCTACTAAGATCATGCAAGGAACGATGAACCAGCAATCAGTTGGCATGTCTGTGGGA AACCACAAAAACTATCAGCAGAAGGTTTGTGAAATTGGGAAGTCTTCATCATCCAAAATTAATGAGGTTCCTGGGAAGTCACATCTTCCAACTAAAGCTG ACAGTCGGGTACAGACTCAACCGGATAAGATCAAATCTGAACCTGCGCATCTGACAGATCAGTTGAGCCATGTAACATCAGTTGGAGAACGCACCGACCA GCACAAGTCAGGTGACTTGCAAAACCAGTTGCCAACTGACCACTGGTCTATGCAGGCACAACAACCTCTTGAACAACCACATTTCCCTCAAGTTGACCAA AACCCATTAAATTCCCCCCTGCCTTTCCTGGACACGGTTGAAGAATGGACCTCGCAGCCACCAGTAATGTCTGCTTCGTCAATCCAAAGACAGTCCGCAC CATTGTCAATGTTCGGCCTACAAGAACCATCAGCTGTGTTTCCTGAAATAATGAACAATACCACCACCGCTTTTCCTCTAGTGAACCAGGACGCATGGGA TGATGATCATCAGCTTAACAACTTGAGGTATTTAACCCAATCAAGCCAATTTGGTGGTATGAATCAGCAGCAGGGTCATTGCATCTTCAACGTAAGCGCT GGATTGAAGAATTTGCCAGATGAAAGCAATGGCCAAAACCAGAGTGGGATGTATGGCTCTCTGAGCGTGGATGTCAGCAATGGTGGTGTGATTGACCCTT CTATTTCAAGTGCTATACTAGACGATTTCTGTACCTTGAAGGATACTGATTTCCACAACCTTTCTTCGGATTGCCTGTTGGGGAATTTCAGTTCAAGCCA GGATGTTCAGTCTCAGATAACTTCCGTAAGCTTAGCTGACTCGCAAGCTTTCTCGCAGCAGGAGTTCCCTGATAGTTCAGGTGGGACTTCTTCTAGCAAT GTTGAGTTTGATAAGGGCGGCAACCTCCTGCCAACCAACTCCTGGCAGCCAGTTGCTCCTCCCCGTGTAAGGACATATACCAAGGTTCAGAAGGCAGGGT CTGTGGGGAGGTCAATCGACGTTTCGAGCTTTAAGAACTATGAGGAGCTGTGCTCAGCGATTGAGTGCATGTTTGGGCTTGGCGGGTTGCTAAACAATCC AAGGGAGTCTGGGTGGAAACTAGTTTATGTTGACTATGAGAATGACGTTCTGCTGATTGGAGATGATCCTTGGGAGGAATTTGTTGGGTGCGTACGGTGC ATAAGGATACTGTCACCTCAAGAAGTTCAGCAGATCAGCGAGGAAGGAATGAAGCTTCTCAACAATGCCAATATTCAGCAAGGGACAACCTCATCCTTAG CTGGACAAGGTTACTAA
AA sequence Show only first row Show all	>Lus10012421 pacid=23160977 polypeptide=Lus10012421 locus=Lus10012421.g ID=Lus10012421.BGIv1.0 annot-version=v1.0 MASVEEKGKAGVGLVGAGAQIPATSTLLDEMKLLKEIQDHSAAAGSRKAINSELWYACAGPLASLPQVGSLVYYFPQGHSEQVAVSTKRNATSQIPNYPN LPSQLLCQVHNVTLHADRDTDEIYAQMSLQPVNSDKDIFPVPDFGLKLSRHPAEFFCKTLTASDTSTHGGFSVPRRAAEKLFPQLDYTMQPPSQELIVRD LHDNAWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGIRRANRQQSTLPSSVLSADSMHIGVLAAAAHAAASRSSFTIFYNPRA CPSEFVIPLAKYRKAVCGTQVAVGMRFGMMFETEESAKRRYMGTIVGVSDLDPLRWPGSKWRNLQVEWDEPGCSDKPNRVSSWDVETPESLFIFPSLTSG LKRPMHSGYLGGETEWGNLIKRPLVWLPDGGNTSLAYPPFSDSGSDRLLNMLMKPPAFNYPGLSSPSFQDISAAKGPSVEDATKIMQGTMNQQSVGMSVG NHKNYQQKVCEIGKSSSSKINEVPGKSHLPTKADSRVQTQPDKIKSEPAHLTDQLSHVTSVGERTDQHKSGDLQNQLPTDHWSMQAQQPLEQPHFPQVDQ NPLNSPLPFLDTVEEWTSQPPVMSASSIQRQSAPLSMFGLQEPSAVFPEIMNNTTTAFPLVNQDAWDDDHQLNNLRYLTQSSQFGGMNQQQGHCIFNVSA GLKNLPDESNGQNQSGMYGSLSVDVSNGGVIDPSISSAILDDFCTLKDTDFHNLSSDCLLGNFSSSQDVQSQITSVSLADSQAFSQQEFPDSSGGTSSSN VEFDKGGNLLPTNSWQPVAPPRVRTYTKVQKAGSVGRSIDVSSFKNYEELCSAIECMFGLGGLLNNPRESGWKLVYVDYENDVLLIGDDPWEEFVGCVRC IRILSPQEVQQISEEGMKLLNNANIQQGTTSSLAGQGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Lus10012421 [exp]	0	1
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Lus10024320 [exp]	1.0	0.8613
AT1G30320			Remorin family protein (.1)		Lus10038521 [exp]	13.5	0.7231
AT3G50410	DOF	OBP1, AtDof3. 4	OBF binding protein 1 (.1)		Lus10019646 [exp]	16.7	0.7936
AT5G41620			unknown protein		Lus10017543 [exp]	22.5	0.6862
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10030051 [exp]	22.8	0.7445
AT1G24100		UGT74B1	UDP-glucosyl transferase 74B1 ...		Lus10010712 [exp]	23.0	0.7943
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10000844 [exp]	36.7	0.7860
AT4G10950			SGNH hydrolase-type esterase s...		Lus10001532 [exp]	40.2	0.7832
AT5G61120			unknown protein		Lus10035396 [exp]	45.6	0.7834
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10036627 [exp]	80.9	0.6205

Compare expression of checked genes

Lus10012421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.