Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75590 181 / 2e-59 SAUR-like auxin-responsive protein family (.1) AT5G10990 177 / 4e-58 SAUR-like auxin-responsive protein family (.1) AT1G19840 177 / 4e-58 SAUR-like auxin-responsive protein family (.1) AT4G34750 134 / 4e-41 SAUR-like auxin-responsive protein family (.1.2) AT5G20810 85 / 2e-21 SAUR-like auxin-responsive protein family (.1.2) AT2G24400 85 / 2e-21 SAUR-like auxin-responsive protein family (.1) AT4G34760 83 / 2e-21 SAUR-like auxin-responsive protein family (.1) AT2G21220 82 / 6e-21 SAUR-like auxin-responsive protein family (.1) AT4G38860 76 / 1e-18 SAUR-like auxin-responsive protein family (.1) AT2G18010 76 / 1e-18 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024322 [exp] 251 / 2e-87 AT1G75590 152 / 3e-48 SAUR-like auxin-responsive protein family (.1) Lus10034507 [exp] 217 / 1e-73 AT1G75590 189 / 1e-62 SAUR-like auxin-responsive protein family (.1) Lus10033161 [exp] 203 / 4e-68 AT1G75590 187 / 4e-62 SAUR-like auxin-responsive protein family (.1) Lus10042374 [exp] 127 / 4e-38 AT5G10990 125 / 8e-38 SAUR-like auxin-responsive protein family (.1) Lus10026297 [exp] 124 / 1e-36 AT5G10990 125 / 2e-37 SAUR-like auxin-responsive protein family (.1) Lus10012190 [exp] 119 / 6e-35 AT4G34750 147 / 4e-46 SAUR-like auxin-responsive protein family (.1.2) Lus10021130 [exp] 89 / 1e-23 AT4G34750 97 / 8e-27 SAUR-like auxin-responsive protein family (.1.2) Lus10017179 [exp] 82 / 1e-20 AT4G34750 89 / 6e-24 SAUR-like auxin-responsive protein family (.1.2) Lus10041921 [exp] 77 / 8e-19 AT4G34760 144 / 7e-46 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237000 [exp] 213 / 5e-72 AT1G75590 200 / 4e-67 SAUR-like auxin-responsive protein family (.1) Potri.002G024500 [exp] 209 / 2e-70 AT1G75590 194 / 1e-64 SAUR-like auxin-responsive protein family (.1) Potri.004G164300 [exp] 174 / 6e-57 AT5G10990 170 / 3e-55 SAUR-like auxin-responsive protein family (.1) Potri.009G125900 [exp] 169 / 7e-55 AT5G10990 157 / 5e-50 SAUR-like auxin-responsive protein family (.1) Potri.006G278100 [exp] 84 / 3e-21 AT2G24400 179 / 5e-58 SAUR-like auxin-responsive protein family (.1) Potri.008G003900 [exp] 82 / 1e-20 AT2G24400 110 / 1e-31 SAUR-like auxin-responsive protein family (.1) Potri.004G164400 [exp] 80 / 4e-20 AT4G34760 182 / 4e-61 SAUR-like auxin-responsive protein family (.1) Potri.009G126000 [exp] 79 / 1e-19 AT4G34760 179 / 4e-60 SAUR-like auxin-responsive protein family (.1) Potri.006G137200 [exp] 80 / 4e-19 AT5G20810 201 / 1e-66 SAUR-like auxin-responsive protein family (.1.2) Potri.010G253800 [exp] 79 / 5e-19 AT2G24400 142 / 4e-43 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10012426 pacid=23160970 polypeptide=Lus10012426 locus=Lus10012426.g ID=Lus10012426.BGIv1.0 annot-version=v1.0 ATGTCGACGACCGGATTATCAAAGTGCGCCAAAATCCGACACATAGTTCGGCTGCGGCAAATGCTGCGGCGGTGGAGGAACAAGGCCCGTGTATCAGCCA ACAAGATTCCTTCCGACGTCCCCTCCGGCCACATCGCCGTCTGCGTCGGAATCAGCTTCCGGAGATTCGTGGTCCGGACTACCTACCTGAACCACCCGGT GTTCAGCAATCTCCTGAACCAAGCTGAAGAAGAGTTCGGATTCTCCAACCAAGGCCCACTCACAATACCCTGCGATGAGGCCGTTTTCGAGGAAGCAATC CGGTACATTTCCAGATCCGAGTCCGGAAATCTCGAAGATCTCAAGAAGAGCTGCTGCCACAGATTTGGGATCCGGAGGAAGACTGATTTGTGGACCGAGT CACGCCCCCTGCTCGCTGAGAAAACCATATGTCATATGATTGATTGGATTAACTAG
AA sequence Show only first row Show all	>Lus10012426 pacid=23160970 polypeptide=Lus10012426 locus=Lus10012426.g ID=Lus10012426.BGIv1.0 annot-version=v1.0 MSTTGLSKCAKIRHIVRLRQMLRRWRNKARVSANKIPSDVPSGHIAVCVGISFRRFVVRTTYLNHPVFSNLLNQAEEEFGFSNQGPLTIPCDEAVFEEAI RYISRSESGNLEDLKKSCCHRFGIRRKTDLWTESRPLLAEKTICHMIDWIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75590			SAUR-like auxin-responsive pro...		Lus10012426 [exp]	0	1
AT1G75590			SAUR-like auxin-responsive pro...		Lus10024322 [exp]	1.0	0.9171
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10025829 [exp]	3.7	0.9146
AT3G27090			DCD (Development and Cell Deat...		Lus10012533 [exp]	5.9	0.8957
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10021094 [exp]	8.1	0.8956
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	12.5	0.8964
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10028534 [exp]	15.9	0.8897
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10017361 [exp]	16.3	0.8699
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10008605 [exp]	17.7	0.8909
AT1G10850			Leucine-rich repeat protein ki...		Lus10029075 [exp]	18.3	0.8808
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	19.4	0.8914

Compare expression of checked genes

Lus10012426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.