Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19835 785 / 0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 749 / 0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 550 / 6e-180 Plant protein of unknown function (DUF869) (.1) AT2G23360 214 / 1e-57 Plant protein of unknown function (DUF869) (.1) AT1G77580 129 / 2e-30 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT3G05270 126 / 1e-29 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G21810 102 / 4e-22 Plant protein of unknown function (DUF869) (.1) AT3G19370 78 / 3e-14 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2), Plant protein of unknown function (DUF869) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024324 [exp] 1681 / 0 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024325 [exp] 1488 / 0 AT1G19835 787 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10033160 [exp] 1171 / 0 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 642 / 0 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034510 [exp] 525 / 9e-177 AT1G19835 343 / 5e-108 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10004994 [exp] 211 / 6e-56 AT2G23360 481 / 7e-154 Plant protein of unknown function (DUF869) (.1) Lus10032386 [exp] 161 / 2e-46 AT1G19835 84 / 4e-20 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10018164 [exp] 143 / 7e-35 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10025674 [exp] 136 / 1e-32 AT1G77580 343 / 9e-109 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G024400 [exp] 1082 / 0 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 1076 / 0 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G140300 [exp] 248 / 4e-68 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 241 / 9e-66 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 190 / 1e-49 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 184 / 1e-47 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1) Potri.002G083400 [exp] 146 / 7e-36 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G178100 [exp] 139 / 7e-34 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.007G098500 [exp] 135 / 2e-32 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 125 / 3e-29 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [flax] [poplar] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Lus10012431 pacid=23160957 polypeptide=Lus10012431 locus=Lus10012431.g ID=Lus10012431.BGIv1.0 annot-version=v1.0 ATGGACCGCCGGAGTTGGCCATGGAAGAAGAAATCCTCATCAGAGAAGGCCGTGAAAGCGGCGGCGCCGGCAGCAGCAGCAGCAGCTGAGTCTCTTGATG CTACTTTGGCTTCTACTGAATCACAGGGAGAAAAGGACAAGTACAAGAAACCCAATTATGTGCAAATCTCAGTTGAATCATATACCCATTTGACTGGTCT GGAGGAGCAAGTTATATCCTATGAAGATCAAGTTCAGTCACTGGATGATGAGATCAAGGATTTGAATGAGAAGCTGTCAGCAGCCGAGTCAGAGATTACT ACCAAAGAGAACTTGGTGAAACAGCATGCTAAGGTTGCTGAAGAAGCTGTCTCAGGTTGGGAAAAGGCTGAAGCAGAGGCTTTGGCATTGAAGAACTGTC TAGAGACGATGACTCTCTCGAAGCTGACAGTTGAAGATCGGGCTGCACATTTGGACGGTGCTCTCAAAGAATGCATGAGGCAGATACGCAATCTGAAAGA AGAACACGAGCATAAGTTTCAGGAACTTGTTGTTACCAAGAACAAGCAATGTGATCAAATCAGGCTTGATCTTGAGTCGAAGATAGCGAATTTGGATCAG GAGCTGCTGAGGTCTGCTGCGGAGAGTGCAGCACTGTTAAGGTCGTTGCAAGAGCGTGGCAACATGCTAGTGAAGATGAGCGAAGAGAAATCCCAAGCCG AGGCTGAGATCGAGCTTCTCAAGGGTAATGTGGAATCATGTGAAAGGGAAATAAATTCAATGAAGTACGAAGTCCATGTGGTCTCCAAAGAACTGGAAAT AAGAAATGAAGAGAAGAACATGAGCATGAGATCTGCTGAAGTAGCAAACAAGCAGCATATGGAAGGTGTTAAGAAGATAGCTAAGCTAGAAGCAGAATGC CAAAGGTTACGCGGCCTGGTCAGAAAGAAATTGCCCGGTCCTGCTGCACTTGCACAAATGAAGCTTGAAGTTGAGAGCTTAGGTCGTGATTATGGTGATT CAAGGATCAAAAGGTCACCTGTTATGCCTTCTAGTCCACATATGTCACCCCTCACTGAGTTTTCGCATGACAATTCACCGAAGTTCCACAAAGAAACTGA GTTCCTGACTGAGCGATTATTCTCCATGGAAGAAGAAACCAAGATGCTCAAAGAAGCTTTAGCAAAGCGGAACAGTGAACTTCAGGCTTCTAGGAATCTA TGTGCCAAGACATCAAGCAGGCTTCAGAGTTTAGAAGCACAAGTTCATATGAAATCTTCTCCAAAATCCATCATCCAGGTGGTGCCTGCTGCAGGCTTCT CCACTCAAAATGCTAGCAATCCACCTAGCATTTCATCCATGTCAGAGGATGGTAACGATGACGATCGAAGCTGTGCTGACTCATGGACGGCATCAATGAT CGCTGAGTTTTCTCATCTGAAGAAGGAAAAGGGCCAGAGATCAATCAAGTCGGAAAATTCAAAGAACCTGGACCTCATGGATGACTTCCTTGAGATGGAG AAGCTGGCTTGTTTGGATGCACCCTCGGAATCTCCAAAGAACAAGACTTGTGAAATTTATAATGGTGGACCTCCAGCTGAAGTTGTCTCTATGTCAGCTG AAGTGCAGGCTGACATGGATCGATCTAATATCGAACAACTTTCATTGACGAAAATTCGATCCAAGTTATCTTCGTTGCTGGATTCTATTACAAAAGAAAC CGACATGAGAAAGATATTGGAGGATGTTAAACACGTTATTGCAGAAGAGGGTGGCCAGCAGTCTATAGAGAAGAAGGGAAGTGAGAGTGAAATGAGCCAA GAATTGGCAACTGCTGTTTCTCTGATTCATGACTTTGTATTACTCTTCCGTAAAGAAGCAATGGCAGTTGATGATGCTTTGGACTGCAATGGTTTGACCA AGAAAATAGATGAGCTCTCTGTTACTATTAACAAACTTCTGAGCCAAGGTACAAGCTTGACTACGTTCGTTTTCGACCTTTCTCATGTAATGGACAAAGC AAGTGAACTCCGGTTCAGTGTCCTTGGGTACAAAGGTAATGAAGCGGAAATCAACAGCCCAGATTGTATAGATAAAGTTGCCTTACCAGAGAACAAGATT GTACAACAGGATGATGGTCCGTCATCATCGTCATCTGGCGTGAGTTACGAGAATGGCTGCATAACTTCCCATGTCTCGAGTCCAAAATCGAACCTTGAGG TTCCTGATGATGGGAACCTGACGGCATCAGGGAAAGTCTCATTGCAGGAGTTTGAAGAAGTCAAGTTGCAGAAGGAAAACATGGCAACTGACCTTGCCAG ATGTACTGAGGATCTTCAAACCACCAAGTCTAAGTTAGAAGAAACGGAGCAACTACTTGGTGAAGTAAGATCACAGTTGGCTTCTGCAGAGAAGGCAAAC AGTTTGGCTGAGACGCAGTTGAAATGCATGGCGGGATCCTATAGATCACTTGAAGTACGTGCAGAGGAGCTCGAAACTGAGATCAATCTTCTTAGAGTTA AGACACAGGCGCTAGAGAATGAACTCGAAAGCGAAAAGACTAGCCATGAAGATGCATTGAGACGATGCAAGGATCTTCAAGAGGAACTGGAAAAGAACGG GAGTTGTCCAGTCTGTGCAGCAGCAGCGTTAGAGATGGACGGCAAGAACAAACAGGATCTAGCAGCAGCCGCAGAGAAGCTAGCAGAGTGCCAAGAGACT ATTTTCTTGCTAGGAAAGCAACTCAAGTCCCTACATCCTCAGGCAGAGACAACCACGGTTACTTCCAATAACGAAAGAGTTGATGGATCCACTGGAGAGG AATCAACGAGAAGCGACACCAACTTGCAAGAGATGATGGATAATGGTACTTCTCCTGATCCTCAGTCCCCATCACATACATATGACCACCCGTCTGATGC AGAAACCAACCTGGTCAGTTCAAAGAATAAAAAACATAGGACTACTACAAAATCAACATCATCATCATCGTCAACATCGTCCACCCCGACGCCAGAGAAA CATAAGGGGTACAGCAGGTTCTTTTCCTCCAAAGGAAATAAGAATGGATATCAGTAA
AA sequence Show only first row Show all	>Lus10012431 pacid=23160957 polypeptide=Lus10012431 locus=Lus10012431.g ID=Lus10012431.BGIv1.0 annot-version=v1.0 MDRRSWPWKKKSSSEKAVKAAAPAAAAAAESLDATLASTESQGEKDKYKKPNYVQISVESYTHLTGLEEQVISYEDQVQSLDDEIKDLNEKLSAAESEIT TKENLVKQHAKVAEEAVSGWEKAEAEALALKNCLETMTLSKLTVEDRAAHLDGALKECMRQIRNLKEEHEHKFQELVVTKNKQCDQIRLDLESKIANLDQ ELLRSAAESAALLRSLQERGNMLVKMSEEKSQAEAEIELLKGNVESCEREINSMKYEVHVVSKELEIRNEEKNMSMRSAEVANKQHMEGVKKIAKLEAEC QRLRGLVRKKLPGPAALAQMKLEVESLGRDYGDSRIKRSPVMPSSPHMSPLTEFSHDNSPKFHKETEFLTERLFSMEEETKMLKEALAKRNSELQASRNL CAKTSSRLQSLEAQVHMKSSPKSIIQVVPAAGFSTQNASNPPSISSMSEDGNDDDRSCADSWTASMIAEFSHLKKEKGQRSIKSENSKNLDLMDDFLEME KLACLDAPSESPKNKTCEIYNGGPPAEVVSMSAEVQADMDRSNIEQLSLTKIRSKLSSLLDSITKETDMRKILEDVKHVIAEEGGQQSIEKKGSESEMSQ ELATAVSLIHDFVLLFRKEAMAVDDALDCNGLTKKIDELSVTINKLLSQGTSLTTFVFDLSHVMDKASELRFSVLGYKGNEAEINSPDCIDKVALPENKI VQQDDGPSSSSSGVSYENGCITSHVSSPKSNLEVPDDGNLTASGKVSLQEFEEVKLQKENMATDLARCTEDLQTTKSKLEETEQLLGEVRSQLASAEKAN SLAETQLKCMAGSYRSLEVRAEELETEINLLRVKTQALENELESEKTSHEDALRRCKDLQEELEKNGSCPVCAAAALEMDGKNKQDLAAAAEKLAECQET IFLLGKQLKSLHPQAETTTVTSNNERVDGSTGEESTRSDTNLQEMMDNGTSPDPQSPSHTYDHPSDAETNLVSSKNKKHRTTTKSTSSSSSTSSTPTPEK HKGYSRFFSSKGNKNGYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19835			Plant protein of unknown funct...		Lus10012431 [exp]	0	1
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007585 [exp]	3.5	0.9500
AT4G35240			Protein of unknown function (D...		Lus10012276 [exp]	4.2	0.9550
					Lus10043485 [exp]	4.4	0.9583
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Lus10010015 [exp]	8.9	0.9470
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10029245 [exp]	9.8	0.9472
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10006273 [exp]	11.0	0.9075
AT5G14550			Core-2/I-branching beta-1,6-N-...		Lus10022242 [exp]	13.4	0.9440
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10007296 [exp]	14.7	0.9438
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007584 [exp]	16.4	0.9390
AT2G23360			Plant protein of unknown funct...		Lus10004994 [exp]	18.0	0.9329

Compare expression of checked genes

Lus10012431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.