Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75660 1231 / 0 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) AT5G42540 1013 / 0 AtXRN2, XRN2 exoribonuclease 2 (.1.2) AT1G54490 560 / 0 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024327 [exp] 1731 / 0 AT1G75660 1162 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10034514 [exp] 1200 / 0 AT1G75660 968 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10004119 [exp] 567 / 0 AT1G54490 1140 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10015946 [exp] 546 / 6e-178 AT1G54490 1033 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10000941 [exp] 523 / 1e-170 AT1G54490 1092 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10020397 [exp] 469 / 1e-145 AT1G75660 782 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013326 [exp] 417 / 4e-129 AT1G75660 636 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013328 [exp] 343 / 4e-104 AT1G75660 516 / 2e-171 5'-3' exoribonuclease 3 (.1) Lus10019004 [exp] 282 / 5e-84 AT1G54490 436 / 1e-143 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237500 [exp] 1422 / 0 AT1G75660 1246 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.002G024100 [exp] 1286 / 0 AT1G75660 1137 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.005G048900 [exp] 565 / 0 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G035600 [exp] 547 / 2e-178 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G070200 [exp] 477 / 6e-149 AT1G54490 779 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF03159 [flax] [poplar] XRN_N XRN 5'-3' exonuclease N-terminus CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10012434 pacid=23160959 polypeptide=Lus10012434 locus=Lus10012434.g ID=Lus10012434.BGIv1.0 annot-version=v1.0 ATGGGAGTTCCCGCCTTTTACCGGTGGTTGGCCGAGAAGTATCCCATGGTCATCGTGGATGTAATCGAAGAGGAGGCGGTGGTGATTGAAGACGTCAAGA TTCCGGTCGATACTAGCAAGCCCAACCCTAATGAGATCGAGTACGATAATCTCTACCTCGACATGAACGGGATTATTCATCCTTGCTTCCATCCTGAAGA TAGGCCTTCACCGACATCTTTCGATGAGGTGTTCGAGTGCGTATTTGACTACATTGATAGGCTATTTGTTATGGTGAGGCCCAGGAAGTTGTTGTACATG GCGATTGATGGTGTTGCTCCTCGTGCGAAAATGAATCAGCAACGATCCAGGCGTTTTAGGGCTGCTAAAGATGCATCAGATGCGGCAGCAGAAGAAGCTA GGCTCAGAGAGGAGTTTGAGAAGGAGGGGAGAACGCTTCCTCCTAAGGAGGAGTCGCAAACCTTTGATTCTAACGTCATCACTCCTGGAACTCCTTTTAT GGCTGTTCTCTCAGTTGCATTGCAGTACTATATTCATCTGAGACTGAATAATGATCCTGGATGGAAGAATATTAAGGTTATTCTTTCCGATGCAAATGTC CCTGGTGAAGGGGAACATAAGATTATGTCATATATCCGGCTTCAAAGAAATCTTCCTGGTTATGATCCAAATACTTGCCACTGCCTATATGGTTTGGATG CTGATCTAATTATGCTGGGACTGGCTACCCATGAAATACACTTCTCCATTCTCCGTGAGGTTGTCTTCACTCCTGGACAGCAAGACAAATGCTTCATTTG TGGTCAAATAGGTCATTTAGCTGCAAATTGCGAGGGAAAGGCAAAAAAGAAGGCTGGCGAGTTTGATGAGAAAGGTGGGGAGGCAGCTGTACCTAAAAAG CCATACCAGTTCCTCAACATCTGGACTTTGAGAGAGTATCTTGAATATGAAATGAAGATTCCCAACCCTCCTTTTAAAATTGATTTGGAGCGAGTTGTGG ATGATTTCATCTTTATGTGTTTCTTTGTCGGGAATGATTTTCTGCCACATATGCCGACTCTTGAGATTCGTGAGGGTGCAATTAACTTGCTGCTTGCTGT ATACAAAAAGGAATTCAAGTCAATGGGTGGGTACTTGACTGATGGCAGCAAGCCAAATTTAGACAGGGTGGAGCATTTTATCCAATCAGTAGGATCATTT GAAGATCAAATATTTCAGAAAAGAGCTCGTTTACAACAGCGTCAGACGGAAAGAATCAAGCGTGAAAAGTCACAGGTGAAAAAAGGCGATGATGTTGCAC CTCAAGTTCAACCAGATTCTTTGGTCCCAGTGAATAGATTTCATGGTTCTCGTCTAGCATCAGCTTCAGCTCCATCACCGTACGAGCATAACTCTGAAAG TTCAAATGGTGTTGTGAAAAGGAAACATTCCTTGACTAATAATGATAAAGGATCCCCTGATCGACCCAATAAAGTTGCCCGGTTGTCTTCAGCAGCCAAT ATTGGTGCCGCCATTGTGGAAGCAGAGAATAACCTGGAAATAGAAGAGCAAGAAAACAAAGATGAACTCAAAACAAAGTTGAAGGCCTTACTGCGTGAGA AAGCTGATGTCTTTAACTCAGAAAATGGCGGAGAAGACCAGGTTAAGCTCGGAGAGCCGGGTTGGAAGGAGAGGTACTATGAGGAGAAGTTTTCTGGAGA AACTATCGAGGAACTTGAAAATGTTCGAAGAGATGTTGTTTTAAAATATGTTGAAGGTCTATGCTGGGTTATGCATTATTATTATGAAGGAGTTTGTTCT TGGCGCTGGTTCTATCCGTATCATTATGCACCCTTTGCTTCTGATCTTAAGGACCTTGGTCAGCTGGATATTACATTTGATATGGGTTCTCCTTTCAAAC CGTTCAATCAGCTTTTGGGAGTTTTCCCTTCTGCAAGTTCTCATGCTCTTCCTGTAGAGTATAGAAAATTGATGTCAGATGCAAACTCACCTATTATTGA TTTCTACCCAGTTGATTTTGAAGTCGACATGAACGGGAAACGGTTCTCCTGGCAGGGTATCGCGAAACTTCCATTCATTGACGAAGGTCGGCTTCTTGCT GAGGTTGAGAAAGTTGAACATACTTTAACGGAGGAGGAAGCAAGGAGGAACAGTTTCATGTTTGACATGCTTTTTGTTTCTTCATCTCATACTATGGCCC AGTTCATATATTTGCTCGACAATCAGTCTAAACAACTGACAAACAATGAGAGAATTGATATCAAGGAACGACTAAACCCTGAATTGAGGACTACGTGCAG TGATGGGATGAATGGCTATATATCCCCTTGTGGCGGAGATACTCACCCTCCAGTATTTAGGTCCCCAGTTGCAGGCATGGAAGACATTTTGGACAACGAA GTCATATGTGCTATTTACAGACTCCCCGATCCCCATAGTCACATTACCCGACCACCTCCTGGAGTCAAGTTCCCTAAAAAGACTGTTGGCTTGGAAGACA TGCAACCTGAACCTGTTTTATGGCATGAAGATACCGGAAGGGGTTCTCGGGGTCGTGGTAATTATGACAGGCACAACAATAACCACCGTGGAAACTTCTC TGTCCGTCAGCTCGGGGATGCATCACATCGGCTTGTCACCAATAGCTTACAGGGAAACAGACATGGGAATGATTATAACAACCACCATGCACATGGTCGA TCATCTTACAATCCCATGCCGTATGCCGCCCCTCGCAACTCATCGTACTCTTCTTCTAATGGATCCCACGATCAGGGGAGACGTGGAGCTGCGGACTACT CACATTCTAGACACCAAGCTGCTGTTATAGATCCGCCCTATGAAGTCCATGTCGGCACCAACCCACGGTATGGGGGCTCTCATCCTTCCTACGAACGCGA GAGCCGAGATCAAGGATATTATCCTCAAGGTAACGGGCGTGGCTATGTTCCTCAGCCTGCATATTCTTCTCACCAAGGTGGTGGTGGTTATGATGGCTAC CAAAGTGCTGCTGGGAGCTATCAACAGTTGGACGGTGGTTTAGCCGCACCAGGATTTGGTCATAACCATCATGAACAGAGCAGCAATCGATTTGGTGCAT TCGAGCAAAGAGGGAACAGATTCCCACCACCCCAACATGGAGGGCACCAGAGGACTCATCAGCAACATCCGCCGCCACCTGGGACTGGCAATCGGAGGCC GCCTTACCCACCATCGAATGCCGCAGCAGGTAGGAGGCCTGGTGGTTACAACAGGCGGTAG
AA sequence Show only first row Show all	>Lus10012434 pacid=23160959 polypeptide=Lus10012434 locus=Lus10012434.g ID=Lus10012434.BGIv1.0 annot-version=v1.0 MGVPAFYRWLAEKYPMVIVDVIEEEAVVIEDVKIPVDTSKPNPNEIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECVFDYIDRLFVMVRPRKLLYM AIDGVAPRAKMNQQRSRRFRAAKDASDAAAEEARLREEFEKEGRTLPPKEESQTFDSNVITPGTPFMAVLSVALQYYIHLRLNNDPGWKNIKVILSDANV PGEGEHKIMSYIRLQRNLPGYDPNTCHCLYGLDADLIMLGLATHEIHFSILREVVFTPGQQDKCFICGQIGHLAANCEGKAKKKAGEFDEKGGEAAVPKK PYQFLNIWTLREYLEYEMKIPNPPFKIDLERVVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFKSMGGYLTDGSKPNLDRVEHFIQSVGSF EDQIFQKRARLQQRQTERIKREKSQVKKGDDVAPQVQPDSLVPVNRFHGSRLASASAPSPYEHNSESSNGVVKRKHSLTNNDKGSPDRPNKVARLSSAAN IGAAIVEAENNLEIEEQENKDELKTKLKALLREKADVFNSENGGEDQVKLGEPGWKERYYEEKFSGETIEELENVRRDVVLKYVEGLCWVMHYYYEGVCS WRWFYPYHYAPFASDLKDLGQLDITFDMGSPFKPFNQLLGVFPSASSHALPVEYRKLMSDANSPIIDFYPVDFEVDMNGKRFSWQGIAKLPFIDEGRLLA EVEKVEHTLTEEEARRNSFMFDMLFVSSSHTMAQFIYLLDNQSKQLTNNERIDIKERLNPELRTTCSDGMNGYISPCGGDTHPPVFRSPVAGMEDILDNE VICAIYRLPDPHSHITRPPPGVKFPKKTVGLEDMQPEPVLWHEDTGRGSRGRGNYDRHNNNHRGNFSVRQLGDASHRLVTNSLQGNRHGNDYNNHHAHGR SSYNPMPYAAPRNSSYSSSNGSHDQGRRGAADYSHSRHQAAVIDPPYEVHVGTNPRYGGSHPSYERESRDQGYYPQGNGRGYVPQPAYSSHQGGGGYDGY QSAAGSYQQLDGGLAAPGFGHNHHEQSSNRFGAFEQRGNRFPPPQHGGHQRTHQQHPPPPGTGNRRPPYPPSNAAAGRRPGGYNRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	0	1
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10007803 [exp]	1.0	0.9424
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	2.0	0.9049
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006304 [exp]	3.9	0.8988
AT1G29370			Kinase-related protein of unkn...		Lus10004604 [exp]	4.0	0.9021
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10020230 [exp]	5.7	0.8828
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	7.5	0.9046
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10032431 [exp]	8.0	0.8792
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	8.4	0.8814
AT3G56870			unknown protein		Lus10018851 [exp]	9.2	0.8827
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	9.8	0.8718

Compare expression of checked genes

Lus10012434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.