Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28305 317 / 3e-111 ATLOG1 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) AT5G06300 317 / 7e-111 LOG7 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) AT2G37210 315 / 5e-110 LOG3 LONELY GUY 3, lysine decarboxylase family protein (.1.2) AT3G53450 307 / 5e-107 LOG4 LONELY GUY 4, Putative lysine decarboxylase family protein (.1) AT2G35990 290 / 4e-100 LOG2 LONELY GUY 2, Putative lysine decarboxylase family protein (.1.2.3) AT4G35190 285 / 4e-98 LOG5 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) AT5G11950 268 / 2e-91 LOG8 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) AT5G03270 233 / 1e-77 LOG6 LONELY GUY 6, lysine decarboxylase family protein (.1) AT5G26140 155 / 2e-48 ATLOG9 LONELY GUY 9, Putative lysine decarboxylase family protein (.1) AT1G50575 46 / 7e-06 Putative lysine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024328 [exp] 401 / 7e-144 AT5G06300 328 / 2e-115 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10016096 [exp] 330 / 4e-116 AT2G28305 384 / 7e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10021462 [exp] 329 / 1e-115 AT2G28305 386 / 1e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10026513 [exp] 323 / 5e-113 AT2G37210 394 / 1e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10002226 [exp] 317 / 5e-111 AT2G37210 379 / 2e-135 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10023190 [exp] 305 / 3e-106 AT2G37210 364 / 6e-130 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10003335 [exp] 298 / 3e-103 AT4G35190 359 / 2e-127 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10022638 [exp] 297 / 1e-102 AT4G35190 365 / 2e-129 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10025117 [exp] 293 / 8e-101 AT4G35190 373 / 1e-132 LONELY GUY 5, Putative lysine decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237600 [exp] 377 / 8e-135 AT5G06300 338 / 2e-119 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.002G024000 [exp] 377 / 2e-134 AT2G37210 310 / 2e-108 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.009G010800 [exp] 333 / 4e-117 AT2G28305 359 / 8e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.004G212200 [exp] 330 / 3e-116 AT2G28305 361 / 1e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.006G127400 [exp] 325 / 6e-114 AT2G37210 396 / 3e-142 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.016G090500 [exp] 323 / 2e-113 AT2G37210 392 / 8e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.006G204800 [exp] 311 / 7e-109 AT5G06300 316 / 9e-111 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.005G248900 [exp] 303 / 3e-105 AT4G35190 297 / 7e-103 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.002G012500 [exp] 298 / 3e-103 AT4G35190 300 / 5e-104 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.004G181800 [exp] 296 / 2e-102 AT4G35190 361 / 3e-128 LONELY GUY 5, Putative lysine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0349 [flax] [poplar] SLOG PF03641 [flax] [poplar] Lysine_decarbox Possible lysine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10012436 pacid=23160981 polypeptide=Lus10012436 locus=Lus10012436.g ID=Lus10012436.BGIv1.0 annot-version=v1.0 ATGGAAAACCAACAATTCCAGCAACAGCAGCAGCTCCCTGGTTCAAGTTCAAGATTCAGGCGTGTATGCGTGTTTTGCGGGAGCAGCCCTGGCAAGAACC CAAACTATCAGCTTGCTGCTCTTCACCTTGCCCAACAATTGGTTGAGAGGAAGATAGACTTAGTTTATGGAGGAGGAAGCATTGGGCTTATGGGTCTCGT CTCCCAAGCTGTTTATCAAGGTGGCCGCCACGTCTTGGGGGTTATTCCCAGGACTCTGATGCCAAGAGAGATTACGGGAGAATCTGTAGGAGAAGTAAAA CCGGTGTCAGGAATGCACCAAAGAAAAGCTGAAATGGCTCGTCAGGCCGACGCATTTATTGCCCTTCCCGGCGGATATGGGACCCTCGAGGAGCTCCTTG AAGTCATCACTTGGGCTCAACTTGGCATTCACGATAAACCTGTTGGGTTGTTGAATGTTGATGGATATTATAATTCATTACTGTCCTTCATAGACAAGGC TGTGGATGAAGGGTTCATCTCCCCAGCTGCCCGCCACATTATTGTCTCTGCCCAAACCCCCCAAGATCTCATGTCCAAGCTCGAGGAATATGAACCTGAG CACTCTGGTGTGGCCTCCAAACTGAGTTGGGAGATGGAGCAACAATTGGGTTACACGATCAAGTTGGACATCTCTCGTTGA
AA sequence Show only first row Show all	>Lus10012436 pacid=23160981 polypeptide=Lus10012436 locus=Lus10012436.g ID=Lus10012436.BGIv1.0 annot-version=v1.0 MENQQFQQQQQLPGSSSRFRRVCVFCGSSPGKNPNYQLAALHLAQQLVERKIDLVYGGGSIGLMGLVSQAVYQGGRHVLGVIPRTLMPREITGESVGEVK PVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFISPAARHIIVSAQTPQDLMSKLEEYEPE HSGVASKLSWEMEQQLGYTIKLDISR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10012436 [exp]	0	1
AT2G20080			unknown protein		Lus10012982 [exp]	1.4	0.9562
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Lus10037895 [exp]	4.9	0.9268
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001018 [exp]	5.2	0.8865
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033392 [exp]	5.2	0.9267
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10033885 [exp]	6.9	0.8480
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10012531 [exp]	7.7	0.9009
					Lus10007012 [exp]	8.5	0.8914
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004441 [exp]	10.9	0.8898
AT1G11655			unknown protein		Lus10002065 [exp]	19.3	0.8833
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027429 [exp]	19.4	0.8758

Compare expression of checked genes

Lus10012436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.