Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033763 [exp] 168 / 1e-54 ND / Lus10018665 [exp] 40 / 0.0002 AT1G10140 89 / 2e-22 Uncharacterised conserved protein UCP031279 (.1) Lus10007729 [exp] 40 / 0.0002 AT1G10140 82 / 1e-19 Uncharacterised conserved protein UCP031279 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G290400 [exp] 51 / 1e-08 ND / Potri.009G086000 [exp] 49 / 1e-07 ND / Potri.001G290300 [exp] 40 / 0.0003 ND / Potri.002G117100 [exp] 38 / 0.0007 AT1G58420 84 / 1e-20 Uncharacterised conserved protein UCP031279 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012440 pacid=23145791 polypeptide=Lus10012440 locus=Lus10012440.g ID=Lus10012440.BGIv1.0 annot-version=v1.0 ATGAAGGTGAAAAGTGGAAGCAGCAAGAAGAAGAAGAAGAGCAGGGCGCATGAGTTGATAATAAAAGTGTTGATCGCCCCCTTCAGAGCTCTTTGCAAGG CCACCGACTTCTACGTCAAGACTCTAATGGATTGCCAAGGTTCTGCTACTGGTGGGTATGGGATGGCCGTCAACTGTCATGCACAAATGTTCACCGTCAC CGTTCCAACGACTTCCAATAACAATAATAATAATAATAATGGTCAGTGTAATCTTCCTAAGAGAAGAAGAAGAAGACACAAGGAGAAGGATCATGATGAT CAGAAGATGAGGTTTCAGTTGATAGAAAAAAGTAACAACTGCAAGAGGAGCTATAGCTTTGAGATTGGCAAGATGGGGATGATTGATGAGGACAGGTCTT GTTCTTTTAGAAAGGTTGACGATGGTGATATACTTTGA
AA sequence Show only first row Show all	>Lus10012440 pacid=23145791 polypeptide=Lus10012440 locus=Lus10012440.g ID=Lus10012440.BGIv1.0 annot-version=v1.0 MKVKSGSSKKKKKSRAHELIIKVLIAPFRALCKATDFYVKTLMDCQGSATGGYGMAVNCHAQMFTVTVPTTSNNNNNNNNGQCNLPKRRRRRHKEKDHDD QKMRFQLIEKSNNCKRSYSFEIGKMGMIDEDRSCSFRKVDDGDIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012440 [exp]	0	1
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	1.4	1.0000
					Lus10008791 [exp]	2.0	1.0000
					Lus10021851 [exp]	3.0	1.0000
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	4.0	0.9932
					Lus10026713 [exp]	4.5	0.9925
AT2G27550		ATC	centroradialis (.1)		Lus10020600 [exp]	4.9	0.9688
					Lus10031183 [exp]	4.9	0.9925
					Lus10020451 [exp]	5.3	0.9919
AT3G44160			Outer membrane OMP85 family pr...		Lus10004104 [exp]	5.5	0.9584
AT5G02920			F-box/RNI-like superfamily pro...		Lus10035325 [exp]	6.9	0.9849

Compare expression of checked genes

Lus10012440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.