Plant FIBer expression Database

Lus10012441 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G23780 196 / 2e-56 F-box family protein (.1)
AT1G23770 152 / 5e-41 F-box family protein (.1)
AT1G70360 99 / 8e-24 F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033762
[exp]
788 / 0 AT1G23780 199 / 4e-57 F-box family protein (.1)
Lus10011411
[exp]
341 / 5e-114 AT1G23770 110 / 5e-28 F-box family protein (.1)
Lus10006139
[exp]
86 / 4e-20 AT1G23780 62 / 3e-12 F-box family protein (.1)
Lus10006138
[exp]
81 / 3e-18 AT1G23770 53 / 3e-09 F-box family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G109700
[exp]
335 / 2e-108 AT1G23780 244 / 2e-74 F-box family protein (.1)
Potri.017G134500
[exp]
61 / 9e-11 AT1G23780 0 / 1 F-box family protein (.1)
Potri.015G020600
[exp]
0 / 1 AT1G23780 0 / 1 F-box family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11566 PI31_Prot_N PI31 proteasome regulator N-terminal
Representative CDS sequence
>Lus10012441 pacid=23145769 polypeptide=Lus10012441 locus=Lus10012441.g ID=Lus10012441.BGIv1.0 annot-version=v1.0
ATGAAATTGCGGCTTAGATCTCTTCAATCCAATCAAACTCTGAAGCTGGAAGTTCTTGAAACATGCACTCTCCATGACCTCGCACAGATTCTCTCTGAAT
CCATCCCTTCGCCGCCTCCATCAACATCTCCTCCCCGTTTCTCTCTTAATCGAAAGGAGGAGCTCCTCGGATCTTCCCCCGTCGAGCCTCTCCGTTCTCT
AGGGATTACCTCTGGTGATTTGATCTACTTCTCTTACGATGCCAATCATTTCTCACCGGTTCCGCCCGATGGAACCCTAGCCTCAACCTCCGTTTCGAGA
TCTGCGGCATCAATTGCAGGCCCAGGCCCCTCTCAGGAAGGTAATAAACCTCCTCCGGCCGCTTCTAAATCGGGTAACTTTGTTGATTCGGATAATAGTA
GCACTAGTGATGTGAATTGCGGGACTAGTTCGGAAATTGATGCTGGTTCTGGGCTTTTGAGTGTTTATGAAGATATGAAGGGGGTAAGCTCGAATGTGAA
TTCAGGTGTAGATGACCAACCTGATTTTGTTGATGGTTGTGAAAAATCAGATGGTTGTGATAGTATGGATATTGATGCGGTATCATCTGAAGATGTTGCT
GTTGTTAGTAGTAAAAGGTTCTCTGAGCCTTACTTTCTACGAAGGGTATTGAGGGAAGAACTGGTGGATTGCGACAGTCATCACAAGCTCTTGGTTGCTG
CAATTCATGCAGTTTTTCTCGAGTCGGGATTTGTTGGGTATGATTCCTTCTCTCGGAGCAGAATTCATCAGCTTCATATTGATGTAGACTGGCCTTTGAA
GCAGTCGACATTGTCTATTTTCTATACTCTCCCTGAACTGCTGGGCAAGGATGTTTCGGTTGTATTGAAGTTCCAAACTTTGGGCAACTTTTTGAATGCT
TTCGGTTCTTCTGCTGCGGGAGGCTCAAATATGCATCGCCTGTGCTTGAATGCAAACACTTATGCCCCAACTCTGCGTCAGATCTGGCAATTGAATTCCA
TGGCGGCAAAGGATGATGAGTCTATCACGGGCATGAGTTCTTGTGAAAACGAGGTTTTCAAGTTCTGGAAAGATGTCAAGGATGGGCTTTGTCTTCCGTT
ACTGATTGATCTCTGTGAGAAGGCCGGTTTGGCTATGCCATCATGTTTCTCAAGCCTCCCAACTGATCTCAAGCTCAGCATTTTGACATTGCTTCCTGGA
GTTGATATTGCAAGGATGGAGTGTGTTTCCATGGAGACGCGATATCTATCTTCAAACAATGAGCTGTGGAAGCAGAAGTTTGCAGAAGAGTTTGGGAATG
CACAACTCCAAACTAGTACCGCGGTGGTGAATTGGAAGCAGAAGTTTGCTAGCGAGGTGGTGAGCAAGAAGAAGCGAAAAAGGGATGCAATGCTTAGAGA
AAGAGATAGAGTTCGTGTAGGACACATGATGAGACCTGTACCTCGAAATAATGTAGGCCGTTATCCACTAATCTGGGGTGGAGATCATGACCTCACCCCG
GGACTGGGCATCCCGTCTCCTTTCCCGGGTGTTGGTCCTGGCATGGGCGCCCCTCATCATTTTTATACGCAGTACAGTGGTCCAAGTTTCCCGCAGCGTG
GGCGAAGAATGCCCCGTAATGTCAGGACTGACAGTGATCTTGAGCGATTTAATGGTAGTCTTTTTGGAGCTGAGCGGCAATGGTGA
AA sequence
>Lus10012441 pacid=23145769 polypeptide=Lus10012441 locus=Lus10012441.g ID=Lus10012441.BGIv1.0 annot-version=v1.0
MKLRLRSLQSNQTLKLEVLETCTLHDLAQILSESIPSPPPSTSPPRFSLNRKEELLGSSPVEPLRSLGITSGDLIYFSYDANHFSPVPPDGTLASTSVSR
SAASIAGPGPSQEGNKPPPAASKSGNFVDSDNSSTSDVNCGTSSEIDAGSGLLSVYEDMKGVSSNVNSGVDDQPDFVDGCEKSDGCDSMDIDAVSSEDVA
VVSSKRFSEPYFLRRVLREELVDCDSHHKLLVAAIHAVFLESGFVGYDSFSRSRIHQLHIDVDWPLKQSTLSIFYTLPELLGKDVSVVLKFQTLGNFLNA
FGSSAAGGSNMHRLCLNANTYAPTLRQIWQLNSMAAKDDESITGMSSCENEVFKFWKDVKDGLCLPLLIDLCEKAGLAMPSCFSSLPTDLKLSILTLLPG
VDIARMECVSMETRYLSSNNELWKQKFAEEFGNAQLQTSTAVVNWKQKFASEVVSKKKRKRDAMLRERDRVRVGHMMRPVPRNNVGRYPLIWGGDHDLTP
GLGIPSPFPGVGPGMGAPHHFYTQYSGPSFPQRGRRMPRNVRTDSDLERFNGSLFGAERQW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G23780 F-box family protein (.1) Lus10012441
[exp]
0 1
AT4G35870 early-responsive to dehydratio... Lus10028409
[exp]
1.0 0.8962
AT2G25490 FBL6, EBF1 EIN3-binding F box protein 1 (... Lus10002913
[exp]
1.4 0.8898
AT4G28980 CAK1AT, CDKF;1 CYCLIN-DEPENDENT KINASE F;1, C... Lus10023659
[exp]
2.2 0.8551
AT4G35870 early-responsive to dehydratio... Lus10041862
[exp]
3.9 0.8622
AT3G18310 unknown protein Lus10023992
[exp]
4.9 0.8553
AT3G57990 unknown protein Lus10021042
[exp]
8.7 0.7570
AT3G10370 SDP6 SUGAR-DEPENDENT 6, FAD-depende... Lus10013467
[exp]
10.2 0.8234
AT3G58050 unknown protein Lus10017239
[exp]
14.5 0.8337
AT2G40980 Protein kinase superfamily pro... Lus10035407
[exp]
17.0 0.8357
AT1G53280 AtDJ1B DJ-1 homolog B, Class I glutam... Lus10009525
[exp]
17.5 0.8186

Lus10012441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.