Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76600 143 / 6e-43 unknown protein AT1G21010 139 / 2e-41 unknown protein AT5G66580 74 / 6e-17 unknown protein AT3G50800 72 / 4e-16 unknown protein AT2G23690 72 / 9e-16 unknown protein AT4G37240 67 / 5e-14 unknown protein AT5G12340 41 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033761 [exp] 305 / 8e-107 AT1G76600 150 / 1e-45 unknown protein Lus10037249 [exp] 186 / 4e-60 AT1G76600 130 / 4e-38 unknown protein Lus10035664 [exp] 185 / 1e-59 AT1G21010 125 / 4e-36 unknown protein Lus10036322 [exp] 106 / 1e-29 AT1G76600 62 / 9e-16 unknown protein Lus10019659 [exp] 76 / 1e-17 AT5G66580 141 / 4e-44 unknown protein Lus10016785 [exp] 59 / 5e-11 AT2G23690 138 / 4e-42 unknown protein Lus10000739 [exp] 57 / 8e-11 AT5G66580 105 / 6e-30 unknown protein Lus10036031 [exp] 43 / 4e-05 AT5G12340 192 / 1e-61 unknown protein Lus10013490 [exp] 42 / 0.0001 AT3G03280 110 / 6e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G259100 [exp] 151 / 2e-46 AT1G21010 186 / 9e-60 unknown protein Potri.002G002100 [exp] 142 / 8e-43 AT1G21010 163 / 1e-50 unknown protein Potri.007G033400 [exp] 72 / 3e-16 AT2G23690 165 / 7e-53 unknown protein Potri.005G130200 [exp] 69 / 7e-15 AT2G23690 174 / 2e-56 unknown protein Potri.004G149600 [exp] 65 / 3e-13 AT4G37240 125 / 5e-37 unknown protein Potri.009G110600 [exp] 62 / 2e-12 AT2G23690 112 / 1e-31 unknown protein Potri.004G149800 [exp] 56 / 5e-10 AT5G66580 91 / 7e-24 unknown protein Potri.009G110700 [exp] 55 / 2e-09 AT5G66580 77 / 2e-18 unknown protein Potri.012G045600 [exp] 53 / 6e-09 AT1G18290 129 / 1e-38 unknown protein Potri.015G036800 [exp] 52 / 1e-08 AT1G18290 122 / 1e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012442 pacid=23145771 polypeptide=Lus10012442 locus=Lus10012442.g ID=Lus10012442.BGIv1.0 annot-version=v1.0 ATGGGATCCTGCTTCTCTTCATCAGTCTCTGCGCCGCCGGCTCCCCCGACGGCTAAAGTCGTCTCAATCAACGGCGATCTCCGTGAGTATGCTCCTCCAG TCTCCGTCTCTCAAGTTCTTATCACCTCAGCTTCCGATTACTTCCTCTGCAACTCCGATCTCTTGTCCTACGACGAACCAATCCCCGCCTTGGCATCCGA CGTCTTCCTAATCCCTAATCAGTTGTATTTCCTGCTTCCGATCTCTAAGCTCAATTCCACGCTCACCGCTCCCGATATGGCTGCTTTGGCTGTTAGGGCT AGCCAGGCTATTCAGAGCTCCAATCGCGGCCGCAAAAAGTCCAGCACCATTTCTCCTGTTTTATTCCTCGGCGACGATGTACTACATCGGGATCAGCAGA GTGACCTGGCGTCGCTGCTAATGTTGCAGTCGCAGAAGCCCAAGGGGGGGCAGGCCGGTGGTGGTGGTCAATTTCGGAGGTCTAGATCTATCAGGAAGTT GCAAAGATATGCTTCCAGACGAGCCAAGCTGGCTGTTCGTTCGTTCCGGCTTGGATTGGCCACCATTTACGAAGGCACCGCCCTTTAA
AA sequence Show only first row Show all	>Lus10012442 pacid=23145771 polypeptide=Lus10012442 locus=Lus10012442.g ID=Lus10012442.BGIv1.0 annot-version=v1.0 MGSCFSSSVSAPPAPPTAKVVSINGDLREYAPPVSVSQVLITSASDYFLCNSDLLSYDEPIPALASDVFLIPNQLYFLLPISKLNSTLTAPDMAALAVRA SQAIQSSNRGRKKSSTISPVLFLGDDVLHRDQQSDLASLLMLQSQKPKGGQAGGGGQFRRSRSIRKLQRYASRRAKLAVRSFRLGLATIYEGTAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76600			unknown protein		Lus10012442 [exp]	0	1
AT1G76070			unknown protein		Lus10034552 [exp]	1.0	0.8876
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	3.2	0.8618
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10032277 [exp]	5.1	0.8858
AT1G07630		PLL5	pol-like 5 (.1)		Lus10016555 [exp]	6.3	0.8465
AT1G59590		ZCF37	ZCF37 (.1)		Lus10007746 [exp]	6.7	0.8231
AT3G62260			Protein phosphatase 2C family ...		Lus10038058 [exp]	7.5	0.8681
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10010719 [exp]	12.7	0.8820
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Lus10022343 [exp]	13.0	0.8538
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Lus10030548 [exp]	14.6	0.7439
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10024643 [exp]	15.7	0.8506

Compare expression of checked genes

Lus10012442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.