Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22960 479 / 4e-163 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) AT5G52920 264 / 4e-80 PKP-BETA1, PKP2, PKP1 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) AT1G32440 259 / 2e-78 PKP3 plastidial pyruvate kinase 3 (.1) AT5G63680 213 / 1e-61 Pyruvate kinase family protein (.1) AT5G08570 209 / 4e-60 Pyruvate kinase family protein (.1) AT4G26390 204 / 1e-58 Pyruvate kinase family protein (.1) AT3G25960 199 / 9e-57 Pyruvate kinase family protein (.1) AT3G55650 199 / 1e-56 Pyruvate kinase family protein (.1) AT5G56350 198 / 2e-56 Pyruvate kinase family protein (.1) AT3G04050 198 / 3e-56 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033757 [exp] 820 / 0 AT3G22960 429 / 5e-145 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012446 [exp] 600 / 0 AT3G22960 616 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033756 [exp] 591 / 0 AT3G22960 599 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10039396 [exp] 469 / 2e-159 AT3G22960 934 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10006633 [exp] 467 / 2e-158 AT3G22960 920 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10000672 [exp] 263 / 8e-80 AT1G32440 830 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10011057 [exp] 262 / 7e-79 AT1G32440 827 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10039316 [exp] 251 / 2e-75 AT5G52920 902 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Lus10010159 [exp] 207 / 2e-59 AT5G08570 896 / 0.0 Pyruvate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G084700 [exp] 636 / 0 AT3G22960 620 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.001G289300 [exp] 632 / 0 AT3G22960 623 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.008G159700 [exp] 473 / 7e-161 AT3G22960 945 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.010G080700 [exp] 473 / 7e-161 AT3G22960 930 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.001G145300 [exp] 266 / 3e-81 AT1G32440 846 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.003G088700 [exp] 265 / 1e-80 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.012G034000 [exp] 251 / 3e-75 AT5G52920 970 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Potri.010G254900 [exp] 207 / 1e-59 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.001G001600 [exp] 202 / 9e-58 AT5G56350 913 / 0.0 Pyruvate kinase family protein (.1) Potri.008G002500 [exp] 200 / 1e-56 AT5G08570 933 / 0.0 Pyruvate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain
Representative CDS sequence Show only first row Show all	>Lus10012445 pacid=23145764 polypeptide=Lus10012445 locus=Lus10012445.g ID=Lus10012445.BGIv1.0 annot-version=v1.0 ATGGCTGCAGCCATTCTTGCATGTCATCCCACTAGCTCACTTCTGGTGAACAGAGCAACCATCTTCTCTTCTTATCTTCCAACTCGCCATGTTCCTTCTC CACGAAGACATGGGGTAACATTAACAAGAGCAGAAGCAAGAGAAATGAGCATCCAAGGAATAAAGTTGAGAGATGAGGTGGCGATGTTGGGTTTTGATGT GGTGGCAGAAGCAGAGCTGAGAGAGAAAGGGTTCATGGGGATGCGGAAGACAAAGCTGGTATGCACAATTGGGCCTGCTTGCTGTTCAATGCAAGATTTG GAGAGATTAGCATGGGAAGGGGTGAACATTGCCAGGCTCAACATGTGCCACGCCTCAAGGGAATGGCACAGAGATACCATTAGGAAGATCAAAAGATTGA ATGAGGAAAATGGGTTCTGTGTCTCCATCATGATTGATACTCAAGGTGGACAGATTCATGTTGTGGACCATGGATCCCCTTCCACTCTCAAAGCTGAGGA AGGTTCGGTGTGGCTGTTTACAGCAGAGAAGTTTGAGGGGTCTAGGCCTTTCACTGTTCAAGCAAGTTATCAAGGGTTTTCACAAGGCATCACAGTGGGA GATGAAATTGTTATTGATGGTGGAATGGCAAGCTTTGAAGTGATTGAAAAGAAAGGGAGTGATCTGCTTTGCAAGTGTACTGATTCTGGTTTGTTCCTAC CTCGAGCCAAATTGAGTTTCTGGAGAAATGGGGAGCTTCTTGTCAGGAACTACGGGCTTCCTAGTTTATCAGAAAAGGATTGGGGTGATATTGAGTTTGG GATTTCGGAAGGTGTCGACTTGATAGCCATGTCATTTGTGAATGGAGCTGATTCTGTCAAGAATTTGAGGAAGTACCTTTCCGAGAAATCGACAAGATCA GTAAGAGTGGTGGCTAAAGTTGAGACCTTGGAGTCACTTCAACACTTGGAGGAAATAGTAGAGGCATCCGACGGGATCATGGTGGCACGAGGCGACTTGG GAGTCGAAGTCCCACTCGATCAGATTCCGACGCTCCAGAAAGAAATTACTACTCTTTGCAGGAAGCTAAACAAGCCAGTGATCATAGCTTCTCAGCTCCT TCAATCCATGGTCGAGTATCCAACTCCGACCCGTGCAGAGGTGGCGGATGTTTCCGAAGGAGTTAGACAGTATGCAGACGCTTTGATGCTATCTGGAGAG TCAGCCATTGGATCGTACAGCCACAAGGCTCTTTCAGTGTTGAGGATGGTCTGCAATCGAATGGAAACATCGAACCACCACGAGAACAGACATGTTTCCC TGGTGAGACATAAACTCGGAGGGTCATTGTATAACTGTGTCGCAGAGGAGATGTGCAATTCTGCTGTTACTATGGGGGATGAGCCGCCCGAGTCTTTGTT CATGAAGGAGTTGAGGAGGAGAGGTATGACTCCGACGTCGCTGCTGGAGGAAACCAAGAAGGGTGCTGGTTTTGGAGTTGAGGACGACGACGACGATGAC GTAATGAAACTAGGAGATGGGGATAGAGTCGGGTCCAAGAGGAATGCAGTTCAAACTGAAATTGATAAAAGCCTCTCCAATCAAAGGGAGCGCTCCATGG CCTTGAACAGCGAAGGCCTTGAGGGATTGATTCCTCGTGCTAAAGTTTTACTTACTACGGGAGGGACATTCTTCTTGGGGTTTGGGCCGTTGATTCTTGT AACCGTGGGAGTTTTCTCTGCTCTCTACTTGATTTTCGGATCAAGTTTTGTGCACGATGGAAGCACAAGTCCAGTGTCACCCCCACCGTACATTGATCCG TACACGCTACTGGAAGAGGAAAGGATTTCTGCAATAGCTCCCAACTTCAAGTGA
AA sequence Show only first row Show all	>Lus10012445 pacid=23145764 polypeptide=Lus10012445 locus=Lus10012445.g ID=Lus10012445.BGIv1.0 annot-version=v1.0 MAAAILACHPTSSLLVNRATIFSSYLPTRHVPSPRRHGVTLTRAEAREMSIQGIKLRDEVAMLGFDVVAEAELREKGFMGMRKTKLVCTIGPACCSMQDL ERLAWEGVNIARLNMCHASREWHRDTIRKIKRLNEENGFCVSIMIDTQGGQIHVVDHGSPSTLKAEEGSVWLFTAEKFEGSRPFTVQASYQGFSQGITVG DEIVIDGGMASFEVIEKKGSDLLCKCTDSGLFLPRAKLSFWRNGELLVRNYGLPSLSEKDWGDIEFGISEGVDLIAMSFVNGADSVKNLRKYLSEKSTRS VRVVAKVETLESLQHLEEIVEASDGIMVARGDLGVEVPLDQIPTLQKEITTLCRKLNKPVIIASQLLQSMVEYPTPTRAEVADVSEGVRQYADALMLSGE SAIGSYSHKALSVLRMVCNRMETSNHHENRHVSLVRHKLGGSLYNCVAEEMCNSAVTMGDEPPESLFMKELRRRGMTPTSLLEETKKGAGFGVEDDDDDD VMKLGDGDRVGSKRNAVQTEIDKSLSNQRERSMALNSEGLEGLIPRAKVLLTTGGTFFLGFGPLILVTVGVFSALYLIFGSSFVHDGSTSPVSPPPYIDP YTLLEEERISAIAPNFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10012445 [exp]	0	1
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10037370 [exp]	6.9	0.7519
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Lus10015619 [exp]	8.2	0.7371
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10032934 [exp]	11.5	0.7343
AT4G02425			unknown protein		Lus10030370 [exp]	13.0	0.7468
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Lus10037636 [exp]	16.3	0.7081
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	19.2	0.7397
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Lus10034461 [exp]	20.5	0.7307
AT1G13930			unknown protein		Lus10036965 [exp]	22.2	0.7291
AT4G12680			unknown protein		Lus10016056 [exp]	22.3	0.6559
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10041348 [exp]	23.8	0.7315

Compare expression of checked genes

Lus10012445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.