Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22960 615 / 0 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) AT5G52920 335 / 5e-108 PKP-BETA1, PKP2, PKP1 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) AT1G32440 327 / 5e-105 PKP3 plastidial pyruvate kinase 3 (.1) AT3G25960 231 / 6e-69 Pyruvate kinase family protein (.1) AT5G63680 228 / 9e-68 Pyruvate kinase family protein (.1) AT3G55650 227 / 3e-67 Pyruvate kinase family protein (.1) AT5G08570 226 / 6e-67 Pyruvate kinase family protein (.1) AT3G04050 224 / 2e-66 Pyruvate kinase family protein (.1) AT4G26390 218 / 6e-64 Pyruvate kinase family protein (.1) AT5G56350 216 / 3e-63 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033756 [exp] 1071 / 0 AT3G22960 599 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10039396 [exp] 611 / 0 AT3G22960 934 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10006633 [exp] 607 / 0 AT3G22960 920 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012445 [exp] 598 / 0 AT3G22960 479 / 7e-163 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033757 [exp] 524 / 0 AT3G22960 429 / 5e-145 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10011057 [exp] 330 / 2e-105 AT1G32440 827 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10000672 [exp] 328 / 2e-105 AT1G32440 830 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10039316 [exp] 319 / 6e-102 AT5G52920 902 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Lus10041003 [exp] 223 / 1e-65 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G289300 [exp] 832 / 0 AT3G22960 623 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.009G084700 [exp] 832 / 0 AT3G22960 620 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.010G080700 [exp] 624 / 0 AT3G22960 930 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.008G159700 [exp] 620 / 0 AT3G22960 945 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.012G034000 [exp] 330 / 8e-106 AT5G52920 970 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Potri.001G145300 [exp] 325 / 5e-104 AT1G32440 846 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.003G088700 [exp] 320 / 2e-102 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.010G254900 [exp] 227 / 2e-67 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 224 / 2e-66 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 223 / 1e-65 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain CL0151 [flax] [poplar] PF02887 [flax] [poplar] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10012446 pacid=23145782 polypeptide=Lus10012446 locus=Lus10012446.g ID=Lus10012446.BGIv1.0 annot-version=v1.0 ATGGCGGTGTCTAGCGACTCAGTTCTCCTCAGATTCGGCTCCGACCAAGTCGTCAAGCAGCCGACTTTTTCGATGAAGAGCCGGTTCCTGGGAATCCCGG CCAGTTCAGTTTCTTGTGTTGGAAGAAAGCGACAGGTGGAGGGTCGTAGGTTTAGGTCATCTGGAATTCGCGCCGTAGCGGAAGCGGCCAGAGTTAAGAA GGCGAGTTTGACGGTGGCAGTTGACAGTGTGGCGGAGCTGGAGTTGAAGGGGAACGGGTTTTCAGGGATGAGGAAGACGAAGCTCGTGTGCACAATTGGA CCGGCGTGCTGTTCGTTGGACGAATTGGAGCGTTTGGCGGCTGGAGGAATGAATGTAGCGCGGCTGAACATGTGCCATAACAGCAGAGAATGGCACAGGG ATGTAATTTCCAAGATCAAGAAGTTGAACGAAGAAAAGGGGTTTTGTGTTTCGGTGATGATCGATACTGAAGGGAGCCAGATTCATGTCGTCGATCATGG AGCTCCTTCTTCTCTCAAAGCTGAGGAGGGATCAGTTTGGGTATTTACAACGCAGAAGTTTGAAGGCTCTCGTCCATTTACAGTCAGAGCAAACTTTGAA GGTTTCTCTCAAGGGATCATGGTTGGTGATGAACTTGTTATTGATGGTGGAATGGCAAGCTTTGTGGTTGTTGAGAAGATGGGAGATGATCTACGCTGCA AGTGTACTGATCCCGGATTGCTCTTGCCTAGGGCCAAAATGAGCTTCTGGAGAAATGGCAAGCTTTCCTACCATGGCCTCCCTACCCTTTCTCAAAAGGA CTGGGAAGACATTGATTTTGGAGTTTCTGAAGGTGTAGATTTCATTGCGGTGTCATTTGTCAGCGATGCTGAGTCTGTCAAGCAACTAAAGCAATATCTA GCCACCAACTCATCCAAATCAGTAAAAGTGTTGGCTAAGGTAGAAACCCTGGAATCTCTTCAAAACTTGGAAGAAATTGTGGAGGCATCCGATGGAATTA TGGTAGCTCGTGGAGACCTTGGGGTTGAAGTTCCAATTGAACAGATCCCAACAGTCCAAGAAAAGATAACTCGCATATGCAGGCAGCTGAACAAGCCAGT CATTATAGCATCTCAACTTCTCGAATCGATGATTGAATATCCAACTCCAACCCGAGCCGAGGTTGCAGATGTAACTGAAGTAGTGAGACAGTACGCAGAT GCATTGATGTTATCTGGCGAATCGGCCATTGGTTCACACGGTCAAAAGGCAATGTCTGTACTGAAGATGGTAAGTAGTCGAATGGAGTCATGGACTCGTG AGGAATGTAGAAAGGCTTCTCCCCTTCATCAAAATAAACATCTTGGAACATCGTTGGCTGATCGAATTGCAGAAGCTATATGCAATTCTGTTGTCGAAAT GGCAAACAACCTTGGCGTGGATGCCATATTTGTGTATACAAAGCATGGGGAGATGGCAACATTGATATCCAGGAACCGGCCAAACCCTCCGATATTTGCT TTTACTAAAGACGGAAGCGCCAGGATGAGCCTGAATTTGCAGTGGGGGGTTATACCAGTTCTTGTGGATAATTTATCAGAAGATATGGAAGCAAACATCT TGAGCACCAGTCAACTAATGAAAACACAAGGCATGGTAAAGCCAGGATGTTCTGTTCTTGTTGTGTCTGATATAACTGCTAATGGCTTCCTGTCCATCCA GATCATGACCATCTCTTGA
AA sequence Show only first row Show all	>Lus10012446 pacid=23145782 polypeptide=Lus10012446 locus=Lus10012446.g ID=Lus10012446.BGIv1.0 annot-version=v1.0 MAVSSDSVLLRFGSDQVVKQPTFSMKSRFLGIPASSVSCVGRKRQVEGRRFRSSGIRAVAEAARVKKASLTVAVDSVAELELKGNGFSGMRKTKLVCTIG PACCSLDELERLAAGGMNVARLNMCHNSREWHRDVISKIKKLNEEKGFCVSVMIDTEGSQIHVVDHGAPSSLKAEEGSVWVFTTQKFEGSRPFTVRANFE GFSQGIMVGDELVIDGGMASFVVVEKMGDDLRCKCTDPGLLLPRAKMSFWRNGKLSYHGLPTLSQKDWEDIDFGVSEGVDFIAVSFVSDAESVKQLKQYL ATNSSKSVKVLAKVETLESLQNLEEIVEASDGIMVARGDLGVEVPIEQIPTVQEKITRICRQLNKPVIIASQLLESMIEYPTPTRAEVADVTEVVRQYAD ALMLSGESAIGSHGQKAMSVLKMVSSRMESWTREECRKASPLHQNKHLGTSLADRIAEAICNSVVEMANNLGVDAIFVYTKHGEMATLISRNRPNPPIFA FTKDGSARMSLNLQWGVIPVLVDNLSEDMEANILSTSQLMKTQGMVKPGCSVLVVSDITANGFLSIQIMTIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10012446 [exp]	0	1
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Lus10040555 [exp]	7.9	0.8607
AT1G16560			Per1-like family protein (.1.2...		Lus10038885 [exp]	9.6	0.8328
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10006411 [exp]	10.0	0.8305
AT5G23280	TCP	TCP7	TCP family transcription facto...		Lus10010177 [exp]	14.0	0.8021
ATCG00500		ATCG00500.1, AC...	acetyl-CoA carboxylase carboxy...		Lus10002473 [exp]	16.5	0.8361
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Lus10009499 [exp]	16.9	0.8376
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Lus10013628 [exp]	21.0	0.8182
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012985 [exp]	24.7	0.8216
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032826 [exp]	24.8	0.8020
AT1G74160			unknown protein		Lus10017857 [exp]	25.1	0.7972

Compare expression of checked genes

Lus10012446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.