Plant FIBer expression Database

Lus10012450 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G03320 65 / 7e-13 RNA-binding ASCH domain protein (.1)
AT2G43465 41 / 0.0002 RNA-binding ASCH domain protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020510
[exp]
268 / 6e-91 AT3G03320 163 / 1e-51 RNA-binding ASCH domain protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G132100
[exp]
0 / 1 AT2G43465 408 / 9e-142 RNA-binding ASCH domain protein (.1)
PFAM info
Representative CDS sequence
>Lus10012450 pacid=23145768 polypeptide=Lus10012450 locus=Lus10012450.g ID=Lus10012450.BGIv1.0 annot-version=v1.0
ATGGTGCAGTCGTCTTCTCCGAGGAAAGTTGCGGTTGACCTTGAGGACGCCATTGATGAGCTGTTGAAAATTCAACCAGGAGCATTGATCCTGTTTAATA
AGGCTTTGGTGGTTCAAGTTCAGGGTGTGCTTCGTTACGCTTCATTTGCCCAGATGTTGGTAACGGAGGGCCTTGACAAAGTCCTTCCTGGTGTAGAAAC
CATGGATGCAGGTAAAAGCCAGATGTCTATCTTCTTGCTTAGTGTGGTTGAAAATGGAGAGTCTTTTACAATATCCAATGCTAAGCATGAGATGCATACA
ATACAACGCTTAATTCCATTGCCCAATCAGGCGTTCAAGTTTACAGAAGGTTTTATACAGAAGAAGAGGAAAGCTCCTATGGTGTCATTGGCATTCATGT
TTCAAGAACAGCCATTCAACCGCACATTTACTTGGCTAAAATTCTTTCTGAATTGCACAGCAGCGGCAAGCTCGAGAGCCTCGTGGGTGGTTTTGAACCA
CTGA
AA sequence
>Lus10012450 pacid=23145768 polypeptide=Lus10012450 locus=Lus10012450.g ID=Lus10012450.BGIv1.0 annot-version=v1.0
MVQSSSPRKVAVDLEDAIDELLKIQPGALILFNKALVVQVQGVLRYASFAQMLVTEGLDKVLPGVETMDAGKSQMSIFLLSVVENGESFTISNAKHEMHT
IQRLIPLPNQAFKFTEGFIQKKRKAPMVSLAFMFQEQPFNRTFTWLKFFLNCTAAASSRASWVVLNH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G03320 RNA-binding ASCH domain protei... Lus10012450
[exp]
0 1
AT4G33280 B3 REM16 AP2/B3-like transcriptional fa... Lus10032873
[exp]
4.0 0.7921
AT2G42990 GDSL-like Lipase/Acylhydrolase... Lus10029958
[exp]
4.8 0.7982
AT2G33580 Protein kinase superfamily pro... Lus10000139
[exp]
16.0 0.7039
AT4G23840 Leucine-rich repeat (LRR) fami... Lus10003886
[exp]
16.6 0.7399
AT5G60370 unknown protein Lus10023343
[exp]
17.3 0.7701
AT2G33580 Protein kinase superfamily pro... Lus10010032
[exp]
24.7 0.6568
AT5G10140 MADS FLF, AGL25, FLC FLOWERING LOCUS F, FLOWERING L... Lus10003123
[exp]
32.5 0.7057
AT4G17140 pleckstrin homology (PH) domai... Lus10006816
[exp]
39.5 0.7311
AT3G09290 C2H2ZnF TAC1 telomerase activator1 (.1) Lus10040767
[exp]
44.9 0.7406
AT4G32050 neurochondrin family protein (... Lus10001536
[exp]
48.1 0.7285

Lus10012450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.