Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19680 291 / 3e-93 Protein of unknown function (DUF1005) (.1) AT1G10020 285 / 6e-91 Protein of unknown function (DUF1005) (.1) AT1G50040 281 / 8e-90 Protein of unknown function (DUF1005) (.1) AT4G29310 238 / 1e-73 Protein of unknown function (DUF1005) (.1) AT5G17640 179 / 6e-51 Protein of unknown function (DUF1005) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020509 [exp] 627 / 0 AT3G19680 320 / 1e-103 Protein of unknown function (DUF1005) (.1) Lus10032807 [exp] 302 / 9e-98 AT1G10020 549 / 0.0 Protein of unknown function (DUF1005) (.1) Lus10012933 [exp] 227 / 3e-70 AT4G29310 434 / 4e-152 Protein of unknown function (DUF1005) (.1) Lus10034991 [exp] 229 / 7e-70 AT4G29310 553 / 0.0 Protein of unknown function (DUF1005) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G084000 [exp] 392 / 3e-133 AT1G10020 389 / 3e-132 Protein of unknown function (DUF1005) (.1) Potri.001G288900 [exp] 390 / 2e-132 AT1G10020 365 / 5e-123 Protein of unknown function (DUF1005) (.1) Potri.002G112600 [exp] 318 / 3e-104 AT1G10020 607 / 0.0 Protein of unknown function (DUF1005) (.1) Potri.005G150100 [exp] 307 / 6e-100 AT1G10020 563 / 0.0 Protein of unknown function (DUF1005) (.1) Potri.013G071000 [exp] 186 / 8e-54 AT5G17640 639 / 0.0 Protein of unknown function (DUF1005) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06219 [flax] [poplar] DUF1005 Protein of unknown function (DUF1005)
Representative CDS sequence Show only first row Show all	>Lus10012451 pacid=23145790 polypeptide=Lus10012451 locus=Lus10012451.g ID=Lus10012451.BGIv1.0 annot-version=v1.0 ATGGATCCGTGCCCTTTCGTGCGGATCCTCGTCGGCAATTTAGCCCTCAAGTTCCCCGCCTCCGTCGATGCTTCCGAATCGTCTTCCACTTCCCTTGCTA TGATCAAGTTCAAGGGTTTCTCTACCCAGCTAGCTACTATCCCAGTCGTACTCGAACAGGACGATCTCCTCCGCCGCCGACACCATCTCCATCACCACCG CCACCGCAACTCCTCTCTCCAGTCCTCCGCTTCCTCTGCCTCCGCTGCTTCCTCTTCCTCCAATCCAAACTCCTGTAGTAATTCACTTGCGGCCTGCTTC AATCTCGATAAGAACCAGATCGATAAATTCGTCCGCTCCTCCACTAAGAAGTCCAGTAGCAGTTTGACTGTCGAGATTTATGCCAGTGAGGATGCGGACG TGCCTGCGTCTTCTTCGTCTTCCGCCGCTGCCTGTTGTTTCTCCAGGCGTAAGTTGATCGGGACGGTGGTTGTACCCCTCGACCTCCTCAAGGCCGAGTT TCGTCCCGCAGTGATGCATAACGGTTGGGTACCGATTGCTGCAAGGAAGAAAGGAGCGGAGCCGGCTCAATTCTTTCTCAATGTTCGGGTCGAGCCTGAC CCGAGATACGTTTTCCAATTCGAATCGGATCCGGTTTGCAGCCCTCAAGTGTTTCAGGTTCAAGGAAACGTCAAGCAAGCCGTGTTCACTTGCAAGTTCA ATTTGAGAAACCAGGGAGATCGAAGCTTAGTCTCACGGCAATCAATGTCGGGCTCGAGCACGCCGAGAAGTTTCCTGCCCTGCGGTGGCGGAGACGGAGG AAGCGATACGAAAGACCAATTCACCAAAGAGAGGAAAGGTTGGACAATTACAATCCATGACCTATCCGGTTCTCCAGTGGCAATGGCGTCAATGGTAACA CCGTTTGTGCCTTCCCCTGGTTCCGATCGGGTCAGCCGATCGAATCCAGGAGCCTGGCTGATTCTCCGACCGTCATCAGGCACCTGGAAATCCTGGGGAC GACTCGAGGCTTGGAGAGAAGCCCGCAAACATCTGGGATACCGCTTCGACCTTCTCCACGACGGGATCACCGCTACACCGACCACCTCCACGCTCGTAAA CTCCGTCGTTAACACGAAAGGCCGAGGGAAATTCAACATCGACATGACCGGGGTAGGTGCAACTCCGGTATGCAGCCCACACAGCAGTTGTGATTTCGGG TCGGGATCTGGATCATGGTCCGGGTCGGAGATCGGGTTGGGGATGTTGACCCAGCCGATGTACAAAGGGTTCGTGATGTCGTCGACGGTGGACGGGAAAG GAGGACAGCCGGAGGTGGAATTGGGGATCCAGCACGTGAACTGCACGGAGGACGCGGCGGCGTTCGTTGCGCTGGCGGCAGCGGTGGATCTGAGCAGAGA AGCCTGCCGGGTATTTCCTCGGAAGCTAAGGAAAGGGTTGAGCTTGTGA
AA sequence Show only first row Show all	>Lus10012451 pacid=23145790 polypeptide=Lus10012451 locus=Lus10012451.g ID=Lus10012451.BGIv1.0 annot-version=v1.0 MDPCPFVRILVGNLALKFPASVDASESSSTSLAMIKFKGFSTQLATIPVVLEQDDLLRRRHHLHHHRHRNSSLQSSASSASAASSSSNPNSCSNSLAACF NLDKNQIDKFVRSSTKKSSSSLTVEIYASEDADVPASSSSSAAACCFSRRKLIGTVVVPLDLLKAEFRPAVMHNGWVPIAARKKGAEPAQFFLNVRVEPD PRYVFQFESDPVCSPQVFQVQGNVKQAVFTCKFNLRNQGDRSLVSRQSMSGSSTPRSFLPCGGGDGGSDTKDQFTKERKGWTITIHDLSGSPVAMASMVT PFVPSPGSDRVSRSNPGAWLILRPSSGTWKSWGRLEAWREARKHLGYRFDLLHDGITATPTTSTLVNSVVNTKGRGKFNIDMTGVGATPVCSPHSSCDFG SGSGSWSGSEIGLGMLTQPMYKGFVMSSTVDGKGGQPEVELGIQHVNCTEDAAAFVALAAAVDLSREACRVFPRKLRKGLSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19680			Protein of unknown function (D...		Lus10012451 [exp]	0	1
AT1G21910	AP2_ERF	DREB26	dehydration response element-b...		Lus10028032 [exp]	1.7	0.8313
AT3G19680			Protein of unknown function (D...		Lus10020509 [exp]	3.3	0.8708
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10017050 [exp]	8.8	0.8473
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026609 [exp]	9.4	0.8096
AT4G24430			Rhamnogalacturonate lyase fami...		Lus10030233 [exp]	10.2	0.8011
AT2G44500			O-fucosyltransferase family pr...		Lus10037475 [exp]	12.6	0.7415
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10016584 [exp]	13.1	0.7546
AT4G26890		MAPKKK16	mitogen-activated protein kina...		Lus10022951 [exp]	13.9	0.7973
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10021370 [exp]	20.7	0.7966
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10000111 [exp]	22.4	0.7953

Compare expression of checked genes

Lus10012451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.