Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33740 93 / 6e-20 unknown protein AT4G37820 88 / 3e-18 unknown protein AT2G22795 87 / 6e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020507 [exp] 443 / 1e-151 AT4G33740 103 / 1e-23 unknown protein Lus10011571 [exp] 101 / 2e-22 AT4G37820 112 / 2e-25 unknown protein Lus10019253 [exp] 96 / 2e-20 AT4G37820 110 / 3e-25 unknown protein Lus10007239 [exp] 56 / 7e-09 AT2G22795 59 / 9e-11 unknown protein Lus10028240 [exp] 54 / 2e-08 AT2G22795 59 / 1e-10 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G083900 [exp] 121 / 3e-29 AT4G33740 94 / 2e-20 unknown protein Potri.001G288800 [exp] 113 / 1e-26 AT4G33740 93 / 7e-20 unknown protein Potri.007G008600 [exp] 102 / 7e-23 AT2G22795 103 / 2e-22 unknown protein Potri.002G112800 [exp] 77 / 1e-15 AT4G37820 83 / 1e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012453 pacid=23145773 polypeptide=Lus10012453 locus=Lus10012453.g ID=Lus10012453.BGIv1.0 annot-version=v1.0 ATGATTAAACGGTTTCCAAGTAGAAATTCTAGGTCGAAAGGAATCAAGGTAAAACATGTTCTGCAGATTTGCCTGTTGCTTGGCGTCTGTTTCTGGTTAA TCTACCAAGTCAAGCATTCTCATGACAAGAAGGAGTTTGATGAGAAAGACGCCGAAGTTGCTGCCAGAGGACAACGTGACCATGAGAAACCAAAGTTCGG GAGGAAAGACCTCCAACCTCGTGTGGATGATGTAGCCAAGAATGAGAAAGCAGGGGAGGATGAAGACGATGACACTGTGGTGGAGGAGGAAGTCATCAAT GGGGGAGAAAGTAAACACGCAGAAGAGGTAGAGCAAGAACATGAAGTTACTAAGCATGAGGATGAGGAGCGAGAAGACATTAGTAAGCAGGAAGATGAAG AAATGGACGAGGATGAGACTAAGCCTGAGGAAGAGGTGCAAGAAGAGGAAAAGAAAACTGACGAGAGTGAAGAAGAAGGCAGAGGAGATGGTGATGATGA GATAGATGAACATGATCATGATAAACTGGAAGCAGAAAATGTTGAGGAAGATGCTATAGATGAGGAGAAAGAAAAAGCCGACGAAGATAACGGAAAGGAG GATGAAGTTAATAAAGATGATCGCAAAGAAGCTGAAGTTGACCACGAAGCGTCACTCAAAGACGCAGATCATGACGATGGAAGCCAGAATACTCATGACC ATGAGGCTCGTGGGGAAAATTATAGAGCAGACGATGCTTCTAGCGCTGTGGCTCATGATGCTCTGACTATTGAATCTGGTAATGAAATTTCGGATAACAC CAATGGAACAACTGATGTACAGGAAGATGAGATAGCCAAGAATAGTGTTACTGCAAATCTGAACTCGACATCACAGCTGGACCAAGGTGACATTGCTGCA AATAGTTCTTCGGATGAGACAGTTGGTGAACTGAAGGATGAGAAAATCAGTCTTCCGAGCTCTGATAATACCACATCCACCATGGTACCAGATGATCATC AACAAAAAAGCTACGAATCTGCTGCAGTGAACCCAGAAACTGGCGAAAATAGCATGGAGACTACTTTGCTAGCAAATTCGACATCGGTGCGAAATGCAAC AACTGGAGGCTCTGCTACTAACGAAGTATCCAACCTACCAACTGACGAAACCACCACCGAACCTCAAAGAGTCGATGATGAGTCTGATTCTGGCAACCTG CCAACCGATCCTCAAAGGGTCAACGATGAGTCTGTTTCTGGTAAGGATCCGTCTACTTCCAGTCCAATCATCTCAGAAGCTGGAGACGGAGAGTCCTCAA ACTCTACTAGCGACTCGAACTCTGGTGCCCATAATCAGACTGTTGATGATGAAACAACAGGTGAAGAAAACGTGAAGCATGTTGGAATTCAAGTGGAGAA CCCAGAAGAGAACCAAGGCCGAGGCAACGCTGAAGCTACACACGACCCAATTGATTTTTCGGATTCTTCAGTTGATCAGGAAGAGAATGCAGGAACTGAT GCAAGTGTTCTTGGCAACGAGAATATTGCAGCAGAATGA
AA sequence Show only first row Show all	>Lus10012453 pacid=23145773 polypeptide=Lus10012453 locus=Lus10012453.g ID=Lus10012453.BGIv1.0 annot-version=v1.0 MIKRFPSRNSRSKGIKVKHVLQICLLLGVCFWLIYQVKHSHDKKEFDEKDAEVAARGQRDHEKPKFGRKDLQPRVDDVAKNEKAGEDEDDDTVVEEEVIN GGESKHAEEVEQEHEVTKHEDEEREDISKQEDEEMDEDETKPEEEVQEEEKKTDESEEEGRGDGDDEIDEHDHDKLEAENVEEDAIDEEKEKADEDNGKE DEVNKDDRKEAEVDHEASLKDADHDDGSQNTHDHEARGENYRADDASSAVAHDALTIESGNEISDNTNGTTDVQEDEIAKNSVTANLNSTSQLDQGDIAA NSSSDETVGELKDEKISLPSSDNTTSTMVPDDHQQKSYESAAVNPETGENSMETTLLANSTSVRNATTGGSATNEVSNLPTDETTTEPQRVDDESDSGNL PTDPQRVNDESVSGKDPSTSSPIISEAGDGESSNSTSDSNSGAHNQTVDDETTGEENVKHVGIQVENPEENQGRGNAEATHDPIDFSDSSVDQEENAGTD ASVLGNENIAAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33740			unknown protein		Lus10012453 [exp]	0	1
AT1G55340			Protein of unknown function (D...		Lus10010650 [exp]	2.0	0.8958
AT2G29590			Thioesterase superfamily prote...		Lus10018205 [exp]	2.4	0.8587
AT5G45190			Cyclin family protein (.1.2)		Lus10040640 [exp]	2.6	0.8166
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10035924 [exp]	3.5	0.8525
AT5G53650			unknown protein		Lus10032946 [exp]	3.5	0.8363
AT1G77350			unknown protein		Lus10018864 [exp]	6.3	0.8144
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10029505 [exp]	6.9	0.8230
AT5G24165			unknown protein		Lus10014921 [exp]	7.7	0.7945
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10041513 [exp]	9.5	0.7964
AT4G13520		SMAP1	small acidic protein 1 (.1)		Lus10023702 [exp]	9.7	0.7948

Compare expression of checked genes

Lus10012453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.