Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14255 579 / 0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G20350 488 / 6e-167 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT3G04970 89 / 1e-18 DHHC-type zinc finger family protein (.1.2) AT3G26935 86 / 1e-17 DHHC-type zinc finger family protein (.1) AT3G48760 83 / 1e-16 DHHC-type zinc finger family protein (.1) AT3G56930 83 / 1e-16 DHHC-type zinc finger family protein (.1.2) AT3G09320 79 / 3e-16 DHHC-type zinc finger family protein (.1) AT4G24630 80 / 8e-16 DHHC-type zinc finger family protein (.1) AT5G41060 79 / 1e-15 DHHC-type zinc finger family protein (.1.2) AT2G40990 79 / 1e-15 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020505 [exp] 580 / 0 AT2G14255 389 / 2e-131 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10008037 [exp] 500 / 5e-172 AT5G20350 905 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10038108 [exp] 423 / 8e-143 AT5G20350 839 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10038701 [exp] 91 / 4e-20 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10020844 [exp] 91 / 2e-19 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10000132 [exp] 83 / 4e-19 AT2G14255 67 / 2e-14 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10004149 [exp] 90 / 6e-19 AT3G04970 516 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10010852 [exp] 84 / 7e-18 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10024377 [exp] 84 / 8e-18 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G287000 [exp] 657 / 0 AT2G14255 671 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.018G121200 [exp] 516 / 1e-177 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.006G061800 [exp] 511 / 1e-175 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.003G160600 [exp] 91 / 2e-19 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 91 / 2e-19 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 89 / 1e-18 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.006G027400 [exp] 87 / 9e-18 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.015G101900 [exp] 86 / 1e-17 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.005G041000 [exp] 85 / 1e-17 AT3G04970 520 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.007G077000 [exp] 84 / 2e-17 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0465 [flax] [poplar] PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10012455 pacid=23145787 polypeptide=Lus10012455 locus=Lus10012455.g ID=Lus10012455.BGIv1.0 annot-version=v1.0 ATGGCCTCTTCAGGAATCCAAGTCGTGTCGCCGACGGCGGAATCCATCGTCCAGCAGCAGCAGAACGGAATACAGCATGATCAATCCCCAAGCGCTGCAG ATGCAGCGAACGCCACTAATGTTTATTCGGCTTCTGCTTACGGAGATCTCGAGAAATTGCGCTACTATGTTCAACAAGAGGGGGCATCCGTCTCCGTACC CGACGGCCATGGCTACTATGCTCTTCAGTGGGCTGCTCTTGGGAACTTCACTCATGTAGCTCAATTCATTATCGAGCATGGTGGCGATGTTAACGCTACT GACAACTCGGAGCAGACAGCTTTGCACTGGGCAGCAGTTAGGGGCTTGACTTCTGTGGCGGATTTGCTTATTCAAAGTGGAGCTCGGGTTGAGGCGGCTG ATTTTAATGGCTACCGCGCAGTTCATGTTGCTGCTCAATATGGACAAACTGCTTTCTTGAATCACATTGTGGTGAACCATCATGCTGATTTCGATGCACC TGACAACGATGGGAGGAGCCCTCTTCATTGCTCAATGATAATGGACACTATCTCTTTGACAATGATGTATGCCCTTAAGGAAGACTCACTCTCATTTTTT GTGACAAGGGCTGCTTACAAGGGTTGTACTCCTTTACATTGGGCTGCATTAGCTGGGCATGTAGAGGCATGTTCTGTACTTGTGCATGCTGGCACCAAGA AAGAGCTATCAGTGAAAGATAAGGCTGGATTCACTCCTGCTCAGCTTGCATCTGATAAAGGTCATCGACAAGTTGCCCGTTTGCTTTCTAGTGCACAGTT GCTACAGAGCAATACTCTGGGAAACAAATTGTGTGGTCGGAAGCTGAATAGCATTGGATTTGCTCCCATCTTGGTGTCTTCGATCCTTGTTGGTGTTTTT CTTTTTCTTAATTCCATTATTGCAGCTCCAAGTTTCCCGAAGATAACAGCTGCTATTGGCTTTTGGGCAATGGTTTGCGTCTCTCTTGCTATTCTGGCAC TGATCATGTTTACAGATCCTGGCTATATCAAAAGACTGGAGGATTTAGATAAACATGCTAATACAAAGGATCCCCTGTTAAATTTGGATTTGAACAACTC TTCTGTGTGGATTGGGGACTGGTCTCAGCTTTGTCCAACATGCAAGATCATTAGACCTGTTCGATCCAAGCACTGTTCAACCTGTAATCGCTGCGTGCAA CAATTTGACCATCACTGCCCGTGGATATCTAATTGTGTTGGGAAGAGAAACAAACGGGATTTCTTCATTTTCGTTCTCATGGGATTTCTGACTTCATTAG TTGGTGGTACTACTGCACTCTACAGAATCTGGACTGTGCCACCACAATTTCTTCAAGTGGAAACAAACTGGTTTCGGTTTCTAGTATTCCAGCATCCTGG GATTGTTGCATTTTTCATTTTGGACAGCTTCATCTTTATGGCTGCTATAACTCTAACCATAGCACAGGGATGGCAGATAAGTCGAAACATCACGACCAAT GAACTTGCAAATGCCAGGCGTTATGGATACATGCAAGGACCAGACGGGAAGTTCCGGAACCCTTACAATCACGGGTGCAGAAAGAACTGTGTCGATTTCT TCAACAATGGATACATGGATGACAACCCGATTGCATGGCCACCATTGGAGCAGATTGTGAACCACTAA
AA sequence Show only first row Show all	>Lus10012455 pacid=23145787 polypeptide=Lus10012455 locus=Lus10012455.g ID=Lus10012455.BGIv1.0 annot-version=v1.0 MASSGIQVVSPTAESIVQQQQNGIQHDQSPSAADAANATNVYSASAYGDLEKLRYYVQQEGASVSVPDGHGYYALQWAALGNFTHVAQFIIEHGGDVNAT DNSEQTALHWAAVRGLTSVADLLIQSGARVEAADFNGYRAVHVAAQYGQTAFLNHIVVNHHADFDAPDNDGRSPLHCSMIMDTISLTMMYALKEDSLSFF VTRAAYKGCTPLHWAALAGHVEACSVLVHAGTKKELSVKDKAGFTPAQLASDKGHRQVARLLSSAQLLQSNTLGNKLCGRKLNSIGFAPILVSSILVGVF LFLNSIIAAPSFPKITAAIGFWAMVCVSLAILALIMFTDPGYIKRLEDLDKHANTKDPLLNLDLNNSSVWIGDWSQLCPTCKIIRPVRSKHCSTCNRCVQ QFDHHCPWISNCVGKRNKRDFFIFVLMGFLTSLVGGTTALYRIWTVPPQFLQVETNWFRFLVFQHPGIVAFFILDSFIFMAAITLTIAQGWQISRNITTN ELANARRYGYMQGPDGKFRNPYNHGCRKNCVDFFNNGYMDDNPIAWPPLEQIVNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14255			Ankyrin repeat family protein ...		Lus10012455 [exp]	0	1
AT2G45500			AAA-type ATPase family protein...		Lus10009233 [exp]	6.6	0.9089
AT1G05410			Protein of unknown function (D...		Lus10004900 [exp]	8.1	0.8892
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	10.2	0.8978
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	12.4	0.8937
AT1G20670			DNA-binding bromodomain-contai...		Lus10001391 [exp]	14.8	0.8719
AT1G01730			unknown protein		Lus10037855 [exp]	16.9	0.7876
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10033775 [exp]	17.0	0.8735
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10024544 [exp]	18.0	0.8901
AT5G47900			Protein of unknown function (D...		Lus10036333 [exp]	22.2	0.8504
AT1G23230			unknown protein		Lus10035997 [exp]	22.4	0.8562

Compare expression of checked genes

Lus10012455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.