Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33670 502 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 95 / 5e-22 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 91 / 1e-20 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT1G60680 87 / 4e-19 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 84 / 1e-18 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G60710 82 / 2e-17 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 79 / 1e-16 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 74 / 8e-15 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G10810 72 / 5e-14 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37760 63 / 4e-11 AKR4C8 Aldo-keto reductase family 4 member C8, NAD(P)-linked oxidoreductase superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020504 [exp] 587 / 0 AT4G33670 520 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 102 / 7e-25 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 92 / 7e-21 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041185 [exp] 91 / 2e-20 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023674 [exp] 89 / 9e-20 AT1G04690 619 / 0.0 potassium channel beta subunit 1 (.1) Lus10011751 [exp] 89 / 9e-20 AT1G04690 619 / 0.0 potassium channel beta subunit 1 (.1) Lus10037437 [exp] 84 / 3e-18 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041272 [exp] 84 / 4e-18 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 83 / 1e-17 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081300 [exp] 535 / 0 AT4G33670 529 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G287100 [exp] 526 / 0 AT4G33670 518 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 102 / 8e-25 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 97 / 5e-23 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 93 / 2e-21 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.014G147700 [exp] 89 / 5e-20 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G052400 [exp] 89 / 9e-20 AT1G60680 395 / 1e-137 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 87 / 4e-19 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G052100 [exp] 86 / 9e-19 AT1G04690 602 / 0.0 potassium channel beta subunit 1 (.1) Potri.002G234201 [exp] 85 / 2e-18 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10012456 pacid=23145779 polypeptide=Lus10012456 locus=Lus10012456.g ID=Lus10012456.BGIv1.0 annot-version=v1.0 ATGGAGTACCGACCACTGGGGAACACCGGCCTCAAGCTCAGTTGCGTGGGCTTCGGAGCTTCTCCTCTCGGCAATACCTTCGGCCCTGTTTCCGAGCACG ACGCCTTCGCCTCCGTCCGCCAGGCCTTCCGCCTTGGCATTAATTTCTTCGACACCTCTCCATATTATGGAGCTACATTGTCGGAGAAGGTGCTTGGTAA GGCACTCAAGGCACTAGGGGCTCCCAGAAATGAGTATATTGTGTCGACCAAATGCGGGAGGTATAGCGAGGGCTTTGATTTCAGTGCCGAGAGGGTGACT AGAAGCATCGACGAGAGCTTAACAAGGTTGCAGCTGGATTATGTTGATATACTGCATTGCCACGACATTGAGTTTGGCTCTCTGGATCAGATTGTGACGG AGACGATTCCTGCTCTTCTGAAACTAAAGGAAGCTGGGAAGATCAAATTCATTGGGATAACTGGACTTCCACTGGGGATATTTACATATGTGCTTGATCG AGTGCCTCCAGGCACAGTTGATGTGATCTTGTCATATTGTCACTACAGTATTAATGATTCGACGTTGGCGGATTTAATTCCCTATTTGAAAAGCAAAGGT GTAGGTATTATCAGTGCTTCTCCACTGTCTATGGGACTACTTACAGAAACCGGCCCTCCAGAATGGCACCCAGCTTCTCCTGAACTGAAGGCGGCCTGTA AAGCTGCTGCCTTGCACTGTAAACAGAAAGGAAAAGATCTTCCGAAGCTAGCACTGCAGTACAGTTTAAAAAACAAGGATATTTCAACAACATTGGTTGG GATGAACTCTGTTAAACAGGTGGAGGAAAATGTTGCGGCAGCAACGGAATACGATACATTGGGAGAAGATGTGGAAACGTTAGCAGAAGTAGAAAGCATT CTGAGTCCTGTGAAGAACCAGACGTGGCCAAGTGGAATCCAGCACTAG
AA sequence Show only first row Show all	>Lus10012456 pacid=23145779 polypeptide=Lus10012456 locus=Lus10012456.g ID=Lus10012456.BGIv1.0 annot-version=v1.0 MEYRPLGNTGLKLSCVGFGASPLGNTFGPVSEHDAFASVRQAFRLGINFFDTSPYYGATLSEKVLGKALKALGAPRNEYIVSTKCGRYSEGFDFSAERVT RSIDESLTRLQLDYVDILHCHDIEFGSLDQIVTETIPALLKLKEAGKIKFIGITGLPLGIFTYVLDRVPPGTVDVILSYCHYSINDSTLADLIPYLKSKG VGIISASPLSMGLLTETGPPEWHPASPELKAACKAAALHCKQKGKDLPKLALQYSLKNKDISTTLVGMNSVKQVEENVAAATEYDTLGEDVETLAEVESI LSPVKNQTWPSGIQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33670			NAD(P)-linked oxidoreductase s...		Lus10012456 [exp]	0	1
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10020413 [exp]	2.0	0.8758
AT3G13510			Protein of Unknown Function (D...		Lus10010315 [exp]	4.9	0.8420
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10043090 [exp]	8.1	0.8797
AT2G34560			P-loop containing nucleoside t...		Lus10038499 [exp]	10.5	0.8425
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10015526 [exp]	11.8	0.8573
AT3G16175			Thioesterase superfamily prote...		Lus10037583 [exp]	14.1	0.8095
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10032146 [exp]	15.0	0.8295
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10032665 [exp]	18.2	0.8655
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10016416 [exp]	18.7	0.8433
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Lus10035823 [exp]	20.0	0.8431

Compare expression of checked genes

Lus10012456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.