Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37850 189 / 2e-58 bHLH bHLH025 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22770 164 / 5e-49 bHLH NAI1, bHLH020 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22750 159 / 2e-47 bHLH bHLH018 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G22760 157 / 1e-46 bHLH bHLH019 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 84 / 7e-19 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G46510 84 / 2e-18 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G09820 82 / 9e-18 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12860 82 / 1e-17 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29930 79 / 1e-17 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G17880 79 / 2e-16 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020503 [exp] 486 / 1e-176 AT4G37850 187 / 4e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10019247 [exp] 213 / 1e-67 AT4G37850 217 / 3e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011578 [exp] 207 / 3e-66 AT4G37850 209 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003488 [exp] 202 / 2e-63 AT4G37850 212 / 6e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039639 [exp] 179 / 9e-55 AT4G37850 191 / 3e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039640 [exp] 169 / 2e-50 AT4G37850 156 / 2e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042572 [exp] 78 / 2e-17 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030970 [exp] 79 / 1e-16 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030243 [exp] 77 / 5e-16 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G287200 [exp] 274 / 8e-92 AT4G37850 215 / 7e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G081400 [exp] 265 / 3e-88 AT4G37850 209 / 3e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G095250 [exp] 197 / 6e-62 AT4G37850 213 / 5e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G009400 [exp] 185 / 2e-56 AT4G37850 130 / 1e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G099700 [exp] 87 / 2e-19 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G172101 [exp] 85 / 2e-18 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G208600 [exp] 83 / 5e-18 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 78 / 4e-16 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G105200 [exp] 77 / 4e-16 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.012G106000 [exp] 76 / 1e-15 AT3G26744 339 / 9e-111 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10012457 pacid=23145781 polypeptide=Lus10012457 locus=Lus10012457.g ID=Lus10012457.BGIv1.0 annot-version=v1.0 ATGGAGGATCACAGTCACTTCATTAACCAGTGGCGGCAAATGGAAAGCAGCAACAACAGCTCATTTGGAGTTCCCACACTTGAAAATGGACTGTTTAACA CCACCATGCCTTCTCATCATCATGCTCTGGAGATGGGATTTCTGAAGCCAAAGCAGGAGACAGCAGAGAATATGTATCTTTCTCAGCAAAACTGGTTTGG GAATCATCATAATATTATCTCCAAGGGACGAATCAGAATGTCTCAACAGAGTCAAGATCATGTCATAGCAGAAAGGAAGCGGAGGGAGAAGCTCAGTCAG AAATTCATTGCTTTATCTGCCATCGTACCTGGTCTTAAAAAGATGGATAAGGCTTCTGTTCTTGGGGATGCAATAAAGTACTTGAAACAACTACAGGAGA GAGTTAAAACACTTGAGGAGCAAACAAGGAACAAGTCCATGGAATCAGCTAAGGTGGTTGTGAAGAAATCCCAAGTCTTTGATGAATGTGGTTCCAGCGA GCAGCTACCAGAGATTGAAGCAAGATTCAGTGACAGACACGTTCTCATAAGGGTCCACTGTGAGAAAAAGAAAGGACTCTTGGAGAAGACGGTAGCTGAA ATTGAGAAACTCCATCTGACTGTCATTAACACTAGCGTTCTGACATTTGGAAGCTCTGCTCTGGATCTCACAATCATTACTCAGATGGATGTGGAATTCA ACATGACAGTGAAAGAGGTTGTGCAAAAGCTACACCCAGCTTTTAGTTTGTTCAACTGA
AA sequence Show only first row Show all	>Lus10012457 pacid=23145781 polypeptide=Lus10012457 locus=Lus10012457.g ID=Lus10012457.BGIv1.0 annot-version=v1.0 MEDHSHFINQWRQMESSNNSSFGVPTLENGLFNTTMPSHHHALEMGFLKPKQETAENMYLSQQNWFGNHHNIISKGRIRMSQQSQDHVIAERKRREKLSQ KFIALSAIVPGLKKMDKASVLGDAIKYLKQLQERVKTLEEQTRNKSMESAKVVVKKSQVFDECGSSEQLPEIEARFSDRHVLIRVHCEKKKGLLEKTVAE IEKLHLTVINTSVLTFGSSALDLTIITQMDVEFNMTVKEVVQKLHPAFSLFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10012457 [exp]	0	1
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10000540 [exp]	4.2	0.8189
AT3G49055			unknown protein		Lus10021563 [exp]	9.3	0.6889
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10037081 [exp]	9.7	0.7830
AT5G45780			Leucine-rich repeat protein ki...		Lus10007292 [exp]	17.0	0.7135
AT5G55760		SRT1	sirtuin 1 (.1)		Lus10016619 [exp]	18.5	0.7685
AT3G28760			unknown protein		Lus10005250 [exp]	21.4	0.7669
AT4G31805			WRKY family transcription fact...		Lus10024451 [exp]	23.7	0.7621
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Lus10040253 [exp]	30.7	0.7563
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10032292 [exp]	36.3	0.7174
					Lus10037345 [exp]	38.7	0.7131

Compare expression of checked genes

Lus10012457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.