Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64510 535 / 0 TIN1 tunicamycin induced 1, unknown protein AT1G47310 77 / 3e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020502 [exp] 779 / 0 AT5G64510 555 / 0.0 tunicamycin induced 1, unknown protein Lus10011672 [exp] 116 / 9e-29 AT1G47310 312 / 7e-104 unknown protein Lus10032753 [exp] 110 / 7e-26 AT1G06870 379 / 3e-125 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081500 [exp] 573 / 0 AT5G64510 515 / 0.0 tunicamycin induced 1, unknown protein Potri.014G036300 [exp] 121 / 1e-30 AT1G47310 325 / 7e-109 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012458 pacid=23145766 polypeptide=Lus10012458 locus=Lus10012458.g ID=Lus10012458.BGIv1.0 annot-version=v1.0 ATGGCTACGAAGCTCTTGCCTGTTCTCGTTCTCTTCACCATTCTTTCTCTGTCATCTGCCGCTTCCTCCTCTCCCGAATTCCATCATCCTTCCTATCCCA AAGCCATCACCGACTTGAAGGATGCGGTGGTGAAGGGGCTAGGGTTACATGCAGATGACTTCAAGATATCGGGATTTAATTTCAGAGACGCGCTGGTCGG GCATTCCGTAGAGTATGAATTCGACGTTGAGATCGATAAGCAGGTTGTTCCATTCAAGCTGTTGGAAGATGTGAATCGGTGGGATTACGTCGATCTGCCT CTCTTTAGGATGGAGGACGAGGTTCCGTCGCCGTCAGGCCTTGACAGGAATGCCTTGGTCGACACAAAGAGTGGCAATTCGTTGCCCGTTCTGGCTCCCT TCCAGCTTGCTGGACCTATGGAGATATGGATTCAGGATGCCAAACACATCCGCCTCTCTTTACCGCATGATGTGGATGCTGGAGTGTTGAAGAAAGTAAT GTTAGCAGATGGAGCTGTTGTAACAGTCAAAGGTGCAAGATCTGTTAGCTTACGCCATCCGATCGATCTTCCTTTACCTCTCAACAGGACTCAGAGCGGT TTTGCTGCTGGTCTTCTTGCTCTGGCAGAGCAGCTCCGCCACACATCCCGAGCTGAGGGTGCTCCCCTTTTGTCTCTGCGCATTGTTGGACCTACCTCCC TTGAATCCCCAACCTCTACTGCACAATCCTTTAGTAACAAGCTGAAGCTCAAGCGGCTTGCTCCGGGCTTCGTGGAGTTGTCCTCTCCAATGATCTCCCC AGTTGACCTTGAAGAAGCTACAACCGTCTTGACTCCCAAACACTTCAGCACAATGTGGCCACTTGCTTCCTTGAATGGATCCAACCCAAATCTTGTTGGC TTTGAGAGACTTCTGGCCTCTGTTCTGGGTCCTAAGGCAAACAAGAAGGGTTCCTTCAAGCTATTGAAGGCAGACGTATCTGCTCAGACATTCGTGAAAC TCGGGTTTGGTGTGGAGAAGAAACTGAAAGAGGGAGATGGGATTGTTTTGGAAGGGTTTTCAGATTGGAGGACAAAGCCAGAGTTGGTGAGGATGCATTT CGAGGTGTTGGCTAAGGTGGACGGGAAGAAGGTTATACCAGAGAGAGTTGTGCAGGTTAACCCGGTGATGATTGAAGATACCGTAGCACAGAGTGTACTA ACAGGAAACGTAACAATGTCCACCGTTCCAACTGTTTACACTCCTTCCAACCCCTTCACTCTGTGA
AA sequence Show only first row Show all	>Lus10012458 pacid=23145766 polypeptide=Lus10012458 locus=Lus10012458.g ID=Lus10012458.BGIv1.0 annot-version=v1.0 MATKLLPVLVLFTILSLSSAASSSPEFHHPSYPKAITDLKDAVVKGLGLHADDFKISGFNFRDALVGHSVEYEFDVEIDKQVVPFKLLEDVNRWDYVDLP LFRMEDEVPSPSGLDRNALVDTKSGNSLPVLAPFQLAGPMEIWIQDAKHIRLSLPHDVDAGVLKKVMLADGAVVTVKGARSVSLRHPIDLPLPLNRTQSG FAAGLLALAEQLRHTSRAEGAPLLSLRIVGPTSLESPTSTAQSFSNKLKLKRLAPGFVELSSPMISPVDLEEATTVLTPKHFSTMWPLASLNGSNPNLVG FERLLASVLGPKANKKGSFKLLKADVSAQTFVKLGFGVEKKLKEGDGIVLEGFSDWRTKPELVRMHFEVLAKVDGKKVIPERVVQVNPVMIEDTVAQSVL TGNVTMSTVPTVYTPSNPFTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10012458 [exp]	0	1
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034975 [exp]	3.5	0.8756
AT5G58375			Methyltransferase-related prot...		Lus10008585 [exp]	4.5	0.9118
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10038044 [exp]	4.9	0.9229
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10000589 [exp]	6.6	0.8854
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10019967 [exp]	9.9	0.8384
AT1G32410			Vacuolar protein sorting 55 (V...		Lus10006605 [exp]	9.9	0.8670
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	12.0	0.8985
AT1G76920			F-box family protein (.1)		Lus10018896 [exp]	12.0	0.8614
AT5G60570			Galactose oxidase/kelch repeat...		Lus10037413 [exp]	13.5	0.8723
AT1G61740			Sulfite exporter TauE/SafE fam...		Lus10020068 [exp]	14.5	0.8684

Compare expression of checked genes

Lus10012458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.