Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22780 579 / 0 PMDH1 peroxisomal NAD-malate dehydrogenase 1 (.1) AT5G09660 575 / 0 PMDH2 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) AT1G53240 421 / 7e-148 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT3G15020 419 / 4e-147 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT3G47520 396 / 5e-137 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) AT4G17260 67 / 3e-12 Lactate/malate dehydrogenase family protein (.1) AT3G53910 61 / 1e-11 malate dehydrogenase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020501 [exp] 594 / 0 AT5G09660 482 / 2e-172 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) Lus10039642 [exp] 585 / 0 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10011587 [exp] 509 / 4e-180 AT2G22780 547 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10017939 [exp] 438 / 2e-154 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10038323 [exp] 426 / 7e-150 AT3G15020 578 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Lus10034458 [exp] 394 / 6e-136 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10019096 [exp] 392 / 1e-135 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10013680 [exp] 387 / 1e-134 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10000275 [exp] 380 / 8e-131 AT3G47520 543 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081600 [exp] 614 / 0 AT2G22780 602 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.001G287400 [exp] 608 / 0 AT2G22780 588 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.007G009100 [exp] 567 / 0 AT2G22780 612 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.011G096300 [exp] 429 / 3e-151 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.001G376500 [exp] 428 / 1e-150 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.004G054200 [exp] 421 / 7e-148 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.017G102000 [exp] 405 / 1e-140 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G101900 [exp] 404 / 5e-140 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.004G112800 [exp] 403 / 1e-139 AT3G47520 583 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G152000 [exp] 241 / 2e-78 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10012459 pacid=23145796 polypeptide=Lus10012459 locus=Lus10012459.g ID=Lus10012459.BGIv1.0 annot-version=v1.0 ATGGATTCATCATCGTCAAGTTATGAAGCCATGCAGCGTATTGCCAGAATTTCAGCTCATCTCAACCCTCCACGCTTCCAGGAAAATGGTCAAGGGGAAG ATGGAGGGTTAAGGAGGGAAGCTTGCAGGGCAAAAGGTGGGGCGCCTGGTTTCAAAGTTGCAATCTTGGGAGCAGCTGGAGGCATTGGACAATCACTCTC ACTGCTGATGAAGATGAACCCTTTGGTCTCTGTTCTTCATCTATACGACGTCGTCAACACCCCTGGTGTCACCGCCGATGTCAGCCACATGGACACCACT GCTGTCGTAAGAGGGTTCATGGGCCAACCGCAGCTAGAAGCAGCTCTGACGGGAATGGATCTGGTGATAATCCCAGCTGGTGTACCCAGGAAGCCTGGAA TGACAAGGGATGATCTGTTCAAGATCAATGCAGGAATCGTGAAGACGCTCTGTGAAGGAATAGCTAAGTGCTGCCCTGATGCTGTGGTGAATCTCATCAG CAACCCTGTTAACTCCACCGTCGCCATTGCAGCTGAGGTCTTCAAGAAAGCTGGCACTTACAACCCTAAGCGCCTTCTCGGTGTCACCACCCTTGATGTT GCTCGAGCCAACACTTTTGTGGGAGAGGTTCTAGGGGTGGATCCCAAGATTGTTGATGTTCCAGTTGTTGGAGGCCATGCTGGAGTTACCATCTTGCCAC TTCTATCACAGGTGAAGCCTCCAGCGAACTTCACCCAAGAAGAAACTGAATACCTCACCAAGCGAATCCAAGATGGTGGCACCGAGGTCGTTCAGGCGAA GGCTGGGGCTGGATCTGCAACACTGTCCATGGCGTATGCTGCTGCTAAGTTTGCAGACGCCTGCCTCCGAGGATTAAGAGGCGATGCAGGAGTTATCGAA TGCTCATTTGTAGACTCCCAGGTGACAGAACTGCCATTCTTTGCGACCAAGGTTCGACTGGGTCGCACCGGAATCGAGGAAGTTTATGAGCTCGGCCTCC TGAATGAGTACGAGAGGATTGGACTGGAGAAGGCAAAGAAAGAGCTGGCAGAAAGCATCCAAAAGGGAGTTTCCTTCATCAGAAAATGA
AA sequence Show only first row Show all	>Lus10012459 pacid=23145796 polypeptide=Lus10012459 locus=Lus10012459.g ID=Lus10012459.BGIv1.0 annot-version=v1.0 MDSSSSSYEAMQRIARISAHLNPPRFQENGQGEDGGLRREACRAKGGAPGFKVAILGAAGGIGQSLSLLMKMNPLVSVLHLYDVVNTPGVTADVSHMDTT AVVRGFMGQPQLEAALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPDAVVNLISNPVNSTVAIAAEVFKKAGTYNPKRLLGVTTLDV ARANTFVGEVLGVDPKIVDVPVVGGHAGVTILPLLSQVKPPANFTQEETEYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAAKFADACLRGLRGDAGVIE CSFVDSQVTELPFFATKVRLGRTGIEEVYELGLLNEYERIGLEKAKKELAESIQKGVSFIRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10012459 [exp]	0	1
AT3G14420			Aldolase-type TIM barrel famil...		Lus10013725 [exp]	1.4	0.9729
AT3G14420			Aldolase-type TIM barrel famil...		Lus10005590 [exp]	2.0	0.9709
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10023128 [exp]	2.2	0.9641
AT3G14420			Aldolase-type TIM barrel famil...		Lus10013724 [exp]	2.8	0.9495
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10001645 [exp]	3.0	0.9690
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Lus10027616 [exp]	3.5	0.9452
AT3G47070			unknown protein		Lus10001204 [exp]	4.0	0.9651
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Lus10014115 [exp]	5.1	0.9445
AT1G51400			Photosystem II 5 kD protein (....		Lus10014908 [exp]	6.9	0.9511
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10021662 [exp]	7.0	0.9495

Compare expression of checked genes

Lus10012459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.