Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19700 444 / 2e-146 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT1G09970 440 / 2e-145 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G72180 283 / 2e-85 Leucine-rich receptor-like protein kinase family protein (.1) AT5G49660 276 / 2e-83 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G28440 251 / 5e-74 HSL1 HAESA-like 1 (.1) AT4G28490 245 / 1e-71 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 241 / 2e-70 HSL2 HAESA-like 2 (.1) AT3G49670 224 / 3e-64 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G25790 217 / 1e-61 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 215 / 7e-61 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028232 [exp] 434 / 9e-143 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10007232 [exp] 433 / 2e-142 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10020500 [exp] 366 / 2e-115 AT1G09970 755 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028234 [exp] 283 / 1e-85 AT5G49660 1234 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10007233 [exp] 279 / 4e-84 AT5G49660 1224 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10009476 [exp] 269 / 3e-80 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10018636 [exp] 253 / 1e-74 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 252 / 4e-74 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10013968 [exp] 246 / 6e-72 AT1G28440 1372 / 0.0 HAESA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081800 [exp] 531 / 4e-180 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G106800 [exp] 466 / 6e-155 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G111700 [exp] 292 / 9e-89 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G078400 [exp] 276 / 6e-83 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.017G016600 [exp] 260 / 3e-77 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 251 / 5e-74 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.007G135400 [exp] 251 / 8e-74 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.004G049100 [exp] 251 / 1e-73 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.001G126100 [exp] 226 / 1e-64 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.003G107600 [exp] 224 / 5e-64 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012461 pacid=23145767 polypeptide=Lus10012461 locus=Lus10012461.g ID=Lus10012461.BGIv1.0 annot-version=v1.0 ATGTCACGTTTCTCCCCTCCTTCTACTCTCCTTCTCTTCAATTTTCTCCTTCTTATCATCGCTCATTTCTCCGCCACCGTTGATGACGACGTTCAACTCA AACCCCTGCTCCGCTTCAAGTCCGCCCTTCAAAATTCCCAAACCACCAACGTCTTCAAATCATGGGACTCATTCGGTACTCCCGTCTGCAATTTCACCGG CGTCCTCTGCGACTCCTCCTGGCGCATCACCGAAATCAACCTCCCTAACCAAAGGCTGGCGGGAATCCTCCCTCTGGACGACCTCTGCTCCAGCCTCCCT TCCCTCCGCACGATTTCCCTCGCCGGAAATTCCTTGCGCGGAAGCATCTCCCCAGGATTGAACAACTGCACCAACTTGGAGGTTCTCGACGTGGGTCTGA ATTCCTTCACCGGACAAGTCCCTGAATTCCCCGGTTTATGGAAGCTTAGGTTCTTGAATTTGAATAAAACTGGTCTATCCGGTGAATTCCCCTGGACTTC TCTTGCGAATCTTACCAATTTGCAGTTTCTTAGCCTTGGAGACAACCGGTTCGACGAATTGCCTCGATTCCCCAATGAGATCCTCAAGCTGAACAGACTC ACCTGGCTTTACCTCACCAATTGCAGCATCAAGGGTAGAATTCCCCAAGCCATATCTAATCTTACTCTGCTTCAAAATCTCGAGCTCTCCGACAATCAAT TGTACGGCGAACTCCCACCTGGGGTCGGGAAGCTCACAGACCTCTGGCAGCTCGAGCTCTACAACAATTCCCTATCTGGGAAGCTTCCCGATGGGTTTGG GAATTTGACCAACTTGGTCAATTTCGACGCTTCAACGAACATGCTGGAAGGCGAGCTCCATGAGTTGAAGCCATTGACTAAGCTCGCATCTCTTCAGCTT TTTGAGAACCAGTTTTCCGGCGAGATCCCTGAGGAGATTGGCGAACTCAAGGGTCTTACTGAGATTTCACTTTATAGAAACAAGCTGGTGGGTTCGATTC CGCAGAAGATAGGGTCGTGGGCTGATTTCTATTACATTGACGTGTCGGAGAATTTCTTGACGGGTCAGATCCCACCTGACATGTGCAAAATGGGGCAAAT GACTGATCTTTTGTTGTTGCAGAACAAACTCACGGGCGAAATTCCAGCCAGCTATGCTGATTGCAAGTCCCTGGTGAGACTAAGGGTAAATAACAACTCA CTTACTGGAAGTGTCCCCCCTGGAATTTGGGGTTTGCCTAACATATCAGTGATTGATCTCAGTATGAATCAGTTTGAAGGTTCCGTTACTGATGCTATTG GTCGTGCCAAGTCATTAGGATTGTTCAATTTGGCTAACAATCGGTTTTCCGGGAACTTGCCTGCTGCGATTTCGGAAGCTTCTTCGTTGGTTTCGGGTTT GGGTGGATTGTCACGCGTCACAGAGAGGGGTTACGGAAAAAAATGGGTAATGTAA
AA sequence Show only first row Show all	>Lus10012461 pacid=23145767 polypeptide=Lus10012461 locus=Lus10012461.g ID=Lus10012461.BGIv1.0 annot-version=v1.0 MSRFSPPSTLLLFNFLLLIIAHFSATVDDDVQLKPLLRFKSALQNSQTTNVFKSWDSFGTPVCNFTGVLCDSSWRITEINLPNQRLAGILPLDDLCSSLP SLRTISLAGNSLRGSISPGLNNCTNLEVLDVGLNSFTGQVPEFPGLWKLRFLNLNKTGLSGEFPWTSLANLTNLQFLSLGDNRFDELPRFPNEILKLNRL TWLYLTNCSIKGRIPQAISNLTLLQNLELSDNQLYGELPPGVGKLTDLWQLELYNNSLSGKLPDGFGNLTNLVNFDASTNMLEGELHELKPLTKLASLQL FENQFSGEIPEEIGELKGLTEISLYRNKLVGSIPQKIGSWADFYYIDVSENFLTGQIPPDMCKMGQMTDLLLLQNKLTGEIPASYADCKSLVRLRVNNNS LTGSVPPGIWGLPNISVIDLSMNQFEGSVTDAIGRAKSLGLFNLANNRFSGNLPAAISEASSLVSGLGGLSRVTERGYGKKWVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19700		IKU2	HAIKU2, Leucine-rich repeat pr...		Lus10012461 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	3.2	0.8347
AT1G14750		SDS	SOLO DANCERS, Cyclin family pr...		Lus10034581 [exp]	4.5	0.7543
AT3G24060			Plant self-incompatibility pro...		Lus10011754 [exp]	5.5	0.7913
					Lus10027385 [exp]	6.3	0.7702
					Lus10007146 [exp]	6.8	0.8198
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10000675 [exp]	11.5	0.7727
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	12.0	0.7904
AT5G44150			unknown protein		Lus10005598 [exp]	12.0	0.8109
					Lus10016313 [exp]	13.5	0.7128
AT3G17740			unknown protein		Lus10031899 [exp]	14.7	0.7607

Compare expression of checked genes

Lus10012461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.