Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09970 391 / 2e-128 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G19700 372 / 8e-121 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT5G49660 288 / 2e-89 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G28440 274 / 8e-84 HSL1 HAESA-like 1 (.1) AT4G28650 261 / 4e-79 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G61480 252 / 1e-75 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT5G65710 250 / 4e-75 HSL2 HAESA-like 2 (.1) AT4G28490 250 / 5e-75 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT1G08590 247 / 7e-74 Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 243 / 3e-72 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020500 [exp] 683 / 0 AT1G09970 755 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10007232 [exp] 394 / 2e-129 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028232 [exp] 394 / 3e-129 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028234 [exp] 291 / 2e-90 AT5G49660 1234 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10039872 [exp] 287 / 2e-90 AT1G28440 942 / 0.0 HAESA-like 1 (.1) Lus10007233 [exp] 289 / 1e-89 AT5G49660 1224 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018636 [exp] 287 / 1e-88 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10027951 [exp] 276 / 1e-84 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000814 [exp] 273 / 2e-83 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081800 [exp] 461 / 3e-155 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G106800 [exp] 412 / 4e-136 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G111700 [exp] 297 / 3e-92 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.011G058100 [exp] 285 / 8e-88 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.007G135400 [exp] 281 / 2e-86 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.004G049100 [exp] 279 / 7e-86 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 272 / 2e-83 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.019G078400 [exp] 264 / 2e-80 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 262 / 2e-79 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G021700 [exp] 260 / 8e-79 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10012462 pacid=23145792 polypeptide=Lus10012462 locus=Lus10012462.g ID=Lus10012462.BGIv1.0 annot-version=v1.0 ATGAATTTGAGATCCCAAGAGAAGAGTCCTCTTGGCTGCGTACTGAAGCACAATTCTTCCTGGAACATGAAATCCTTTAGGGTGTTGAGTTTCCGGGAAA GCGACATCATCACCGCGATTAAATCAGAGAACTTGATCGGGAAAGGAGGATCAGGAAATGTGTACAAAGCTACGATTGGAAGTGGCAGTAAGCAGTTGGC TGTTAAGCATATCTGGATGACTAACGACAATCAAGGAGGGAGTTGCCGGAGCAGCTTAGCAATACTGACAAAGGATAAGAAGAAGAAACTTTGGTCGCCG GAGTTCGAAGCAGAGGTGGCGACCCTGAGTACGGTGAGGCATGTGAATGTTGTGAAGTTGTACTGCAGTATCACAAGCGAGGACAGCAACCTTTTAGTTT ATGAGTATCTCCCAAATGGAAGCTTGTGGGATAAGCTACATTCTAGTAGTGAGAAAGTTGTTATGGATTGGGAGCTAAGGTATGCAATTGCTCTCGGTTC TGCGAGTGGGCTGGAGTACTTGCATCATTGCTTCGATCGACCGGTCATCCATCGGGATATCAAGTCCAGCAACATCTTACTAGATGAGGAATGGAACCCA AGGATAGCCGATTTTGGACTAGCCAAGATTCTCCATGGGTCGTCTACAGTGGACGATTGGTCCCATGGCATTGCCGGAACTCATGGCTACATGGCTCCAG AGTATGGATACACAACGAAGATAAACGAGAAGAGTGACGTGTACAGCTTTGGAGTTGTTCTGATGGAGCTGGTGACGGGGAAAAGACCGATTCATGAGCC CGTTTTCGGAGAGAAGAAGGATATAGTAGAATGGGTTTACAGCAAACTGATGAGAAAGGAGAGCAGTATAGCGAGTATTGTGGATTCGAACATCTCGGAT TCGCTAAAGGAAGATGCTGTACAAGTGCTGAAGATTGCAGTTCGTTGCACAGCGAACGTACCGACATTGAGACCTTCGATGAGGATGGTAGTTCACATGC TGGAAGAAGCTCAGCCTCCCCTTCCCCTTGATCTATCCGGGGTAGTTGTGGTTGGAAAAGAAGGTGAAAAGGTAGCATGA
AA sequence Show only first row Show all	>Lus10012462 pacid=23145792 polypeptide=Lus10012462 locus=Lus10012462.g ID=Lus10012462.BGIv1.0 annot-version=v1.0 MNLRSQEKSPLGCVLKHNSSWNMKSFRVLSFRESDIITAIKSENLIGKGGSGNVYKATIGSGSKQLAVKHIWMTNDNQGGSCRSSLAILTKDKKKKLWSP EFEAEVATLSTVRHVNVVKLYCSITSEDSNLLVYEYLPNGSLWDKLHSSSEKVVMDWELRYAIALGSASGLEYLHHCFDRPVIHRDIKSSNILLDEEWNP RIADFGLAKILHGSSTVDDWSHGIAGTHGYMAPEYGYTTKINEKSDVYSFGVVLMELVTGKRPIHEPVFGEKKDIVEWVYSKLMRKESSIASIVDSNISD SLKEDAVQVLKIAVRCTANVPTLRPSMRMVVHMLEEAQPPLPLDLSGVVVVGKEGEKVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10012462 [exp]	0	1
AT5G03795			Exostosin family protein (.1)		Lus10039142 [exp]	3.2	0.7222
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10030472 [exp]	8.2	0.7511
AT5G42965			Polynucleotidyl transferase, r...		Lus10001374 [exp]	34.1	0.7084
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10028002 [exp]	57.4	0.6426
AT5G64830			programmed cell death 2 C-term...		Lus10017236 [exp]	68.4	0.6313
					Lus10008157 [exp]	115.7	0.6498
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10007209 [exp]	168.8	0.6256

Compare expression of checked genes

Lus10012462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.