Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62870 397 / 3e-141 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT2G47610 378 / 5e-134 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT5G08180 41 / 0.0002 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035650 [exp] 444 / 7e-160 AT3G62870 461 / 1e-166 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10010745 [exp] 437 / 1e-156 AT3G62870 452 / 1e-162 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10009322 [exp] 434 / 5e-156 AT3G62870 458 / 2e-165 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10035632 [exp] 434 / 8e-156 AT3G62870 453 / 2e-163 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10015841 [exp] 433 / 2e-154 AT3G62870 460 / 4e-165 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10020500 [exp] 445 / 5e-149 AT1G09970 755 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10010763 [exp] 414 / 2e-148 AT3G62870 441 / 3e-159 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10000421 [exp] 43 / 5e-05 AT5G08180 240 / 9e-83 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10004366 [exp] 43 / 5e-05 AT5G08180 227 / 1e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100800 [exp] 420 / 2e-150 AT3G62870 377 / 1e-133 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.017G101000 [exp] 420 / 2e-150 AT3G62870 376 / 3e-133 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.004G113800 [exp] 420 / 2e-150 AT3G62870 399 / 5e-142 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.004G113900 [exp] 402 / 5e-143 AT3G62870 362 / 7e-127 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.001G326400 [exp] 393 / 6e-140 AT2G47610 385 / 1e-136 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.008G110100 [exp] 42 / 7e-05 AT5G08180 225 / 8e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF01248 [flax] [poplar] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Representative CDS sequence Show only first row Show all	>Lus10012463 pacid=23145804 polypeptide=Lus10012463 locus=Lus10012463.g ID=Lus10012463.BGIv1.0 annot-version=v1.0 ATGGCCCCGAAGAGAGGTGTTAAAGCCCCAGCCTTGACGAAGAAGAAGCCTGAGAAAGTTTCGAATCCATTGTTTGAGAAAAGGCCAAAGCAATTTGGAA TTGGGGGTGCCCTGCCACCAAAAAGGGACTTGACTAGATTCGTCAAGTGGCCTCATGTTGTTCGTATTCAGAGGCAAAGGAGGATTTTGAAGCAGCGTTT GAAGGTTCCTCCTGCAGTTAACCAATTCACAAAAGCACTTGACAAGAATCTCGCCACCCAAATGTTCAAGCTTTTGCTAAAATATCGTCCCGAGGACAAA GCTGCTAAGAAGGAAAGGCTTATTAGCAAAGCAAGAGCTGAGGCTGAGGGAAAGACTGTAGAGTCAAAGAAGCCCATCGTTGTTAAGTATGGACTTAACC ATGTGACATACCTTATTGAGCAGAACAAGGCTCAGCTGGTTATTATCGCTCATGATGTTGATCCCATCGAGCTAGTTGTATGGTTGCCAGCATTGTGCCG CAAGATGGAGGTCCCATATGCTATTGTGAAGGGCAAGTCCAGGCTTGGAGCGATTGTCCACAAGAAGACAGCGGCTGCATTGTGCCTTACCTCGGTGAAA AACGAGGACAAGATGGAATTCAGCAAGATCTTGGAGGCAGTGAAGGCCAACTTCAACGACAAGTTTGATGAGCACAGGAAGAGGTGGGGTGGTGGGATCA TGGGTTCCAAATCTCAGGCCAAGACCAAAGCCAAGGAGAGACTCTTGGCTAAGGAGGCTGCTCAAAGAATGTCTTAA
AA sequence Show only first row Show all	>Lus10012463 pacid=23145804 polypeptide=Lus10012463 locus=Lus10012463.g ID=Lus10012463.BGIv1.0 annot-version=v1.0 MAPKRGVKAPALTKKKPEKVSNPLFEKRPKQFGIGGALPPKRDLTRFVKWPHVVRIQRQRRILKQRLKVPPAVNQFTKALDKNLATQMFKLLLKYRPEDK AAKKERLISKARAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVIIAHDVDPIELVVWLPALCRKMEVPYAIVKGKSRLGAIVHKKTAAALCLTSVK NEDKMEFSKILEAVKANFNDKFDEHRKRWGGGIMGSKSQAKTKAKERLLAKEAAQRMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10012463 [exp]	0	1
AT1G74050			Ribosomal protein L6 family pr...		Lus10039084 [exp]	1.7	0.9796
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10038908 [exp]	1.7	0.9768
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10031021 [exp]	2.0	0.9777
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10039874 [exp]	2.4	0.9717
AT5G41190			unknown protein		Lus10001487 [exp]	3.2	0.9660
AT5G48760			Ribosomal protein L13 family p...		Lus10032599 [exp]	4.0	0.9762
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10015588 [exp]	5.9	0.9729
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10042515 [exp]	6.7	0.9661
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10040433 [exp]	6.9	0.9537
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10020715 [exp]	6.9	0.9681

Compare expression of checked genes

Lus10012463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.