Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70830 151 / 3e-47 MLP28 MLP-like protein 28 (.1.2.3.4.5) AT1G70840 143 / 4e-44 MLP31 MLP-like protein 31 (.1) AT1G70850 145 / 6e-44 MLP34 MLP-like protein 34 (.1.2.3) AT1G70890 140 / 4e-43 MLP43 MLP-like protein 43 (.1) AT5G28010 134 / 9e-41 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70880 130 / 2e-39 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G23130 111 / 1e-31 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G28000 105 / 3e-29 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G35260 90 / 2e-23 MLP165 MLP-like protein 165 (.1) AT1G70860 82 / 3e-21 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020498 [exp] 297 / 4e-105 AT1G70830 160 / 7e-51 MLP-like protein 28 (.1.2.3.4.5) Lus10012742 [exp] 268 / 2e-93 AT1G70830 158 / 6e-50 MLP-like protein 28 (.1.2.3.4.5) Lus10020497 [exp] 187 / 1e-61 AT1G70840 148 / 4e-46 MLP-like protein 31 (.1) Lus10002644 [exp] 92 / 3e-25 AT1G70850 58 / 1e-11 MLP-like protein 34 (.1.2.3) Lus10042490 [exp] 92 / 4e-24 AT1G14930 107 / 3e-30 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10042489 [exp] 82 / 2e-20 AT1G14960 104 / 5e-29 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10033397 [exp] 75 / 2e-17 AT1G14950 121 / 1e-35 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10028887 [exp] 74 / 7e-17 AT2G01520 129 / 1e-38 \(Zusammen-CA\)-enhanced 1, MLP-like protein 328 (.1) Lus10008932 [exp] 76 / 8e-17 AT4G14060 127 / 1e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G111000 [exp] 187 / 9e-62 AT1G70830 175 / 8e-57 MLP-like protein 28 (.1.2.3.4.5) Potri.017G051200 [exp] 120 / 9e-36 AT1G70840 116 / 3e-34 MLP-like protein 31 (.1) Potri.017G051100 [exp] 118 / 2e-34 AT1G70840 115 / 3e-33 MLP-like protein 31 (.1) Potri.008G131300 [exp] 88 / 2e-22 AT1G14930 100 / 1e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G131200 [exp] 85 / 1e-21 AT1G14930 122 / 4e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G131100 [exp] 78 / 7e-19 AT1G70890 107 / 3e-30 MLP-like protein 43 (.1) Potri.010G096000 [exp] 64 / 1e-13 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2) Potri.013G131000 [exp] 46 / 1e-06 AT1G24020 62 / 1e-12 MLP-like protein 423 (.1.2) Potri.004G020000 [exp] 44 / 6e-06 AT1G70880 69 / 3e-15 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.004G020100 [exp] 40 / 0.0002 AT1G70880 58 / 5e-11 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10012466 pacid=23145763 polypeptide=Lus10012466 locus=Lus10012466.g ID=Lus10012466.BGIv1.0 annot-version=v1.0 ATGAGTTGCTGTAGTCTGGTACATGGGAAGCTGGAGGCATATGTTGGAGTAAGAGTAGCTGCTGATATTTTCCATGACATCTTCAGTGGAAGACCTCACC ATATCTCCAACATGGCTCCCCAGAAGATCAAGGGCTGTGACGTCCATGAAGGTGAATGGGGCAAACCAGGCACTGTCATCTGCTGGGATTACTTCCACGA TGGGGAAGCAAAGGTGGCGAAAGAGGTGATCGAGGAGATCGACGATGTGAATCTGTCGACGACCTTTAAGGTGATAGAAGGAGATCTGATGAAGGACTAC AAGAACTTCAAGCTGGTTGTTAAGGCCACTCCGCAAAAGAAGACCGAGGGACAAGACTGGTGCTTGGTTCACTGGATCCTGGACTACGAAAAGCTGAAAG AGGAAACCCCGGAGCCTTTCTCCCTGCTTGAGCTTGTGGTTCACACCAGCAAAGACATTGATGACCATCACACCAAGAAGAAATGA
AA sequence Show only first row Show all	>Lus10012466 pacid=23145763 polypeptide=Lus10012466 locus=Lus10012466.g ID=Lus10012466.BGIv1.0 annot-version=v1.0 MSCCSLVHGKLEAYVGVRVAADIFHDIFSGRPHHISNMAPQKIKGCDVHEGEWGKPGTVICWDYFHDGEAKVAKEVIEEIDDVNLSTTFKVIEGDLMKDY KNFKLVVKATPQKKTEGQDWCLVHWILDYEKLKEETPEPFSLLELVVHTSKDIDDHHTKKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012466 [exp]	0	1
AT1G59840		CCB4	cofactor assembly of complex C...		Lus10010732 [exp]	1.0	0.8823
					Lus10010327 [exp]	4.6	0.8049
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10016365 [exp]	5.7	0.8036
AT1G21150			Mitochondrial transcription te...		Lus10039174 [exp]	7.1	0.8642
					Lus10021139 [exp]	8.7	0.8636
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10041883 [exp]	9.8	0.8213
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10003436 [exp]	17.0	0.8015
AT5G64250			Aldolase-type TIM barrel famil...		Lus10006545 [exp]	18.7	0.8188
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Lus10024288 [exp]	22.2	0.7798
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	25.7	0.7710

Compare expression of checked genes

Lus10012466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.