Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70890 81 / 7e-20 MLP43 MLP-like protein 43 (.1) AT1G70840 79 / 4e-19 MLP31 MLP-like protein 31 (.1) AT1G70830 77 / 2e-18 MLP28 MLP-like protein 28 (.1.2.3.4.5) AT1G70850 78 / 7e-18 MLP34 MLP-like protein 34 (.1.2.3) AT5G28010 67 / 2e-14 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70880 62 / 6e-13 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G23130 52 / 5e-09 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G28000 49 / 7e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G35260 45 / 2e-06 MLP165 MLP-like protein 165 (.1) AT1G14940 42 / 4e-05 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020497 [exp] 166 / 1e-53 AT1G70840 148 / 4e-46 MLP-like protein 31 (.1) Lus10020498 [exp] 99 / 4e-27 AT1G70830 160 / 7e-51 MLP-like protein 28 (.1.2.3.4.5) Lus10012466 [exp] 97 / 5e-26 AT1G70830 161 / 3e-51 MLP-like protein 28 (.1.2.3.4.5) Lus10012742 [exp] 96 / 6e-26 AT1G70830 158 / 6e-50 MLP-like protein 28 (.1.2.3.4.5) Lus10002644 [exp] 62 / 1e-13 AT1G70850 58 / 1e-11 MLP-like protein 34 (.1.2.3) Lus10008932 [exp] 47 / 9e-07 AT4G14060 127 / 1e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10030840 [exp] 39 / 0.0002 AT1G24020 189 / 2e-62 MLP-like protein 423 (.1.2) Lus10030646 [exp] 39 / 0.0003 AT1G24020 189 / 3e-62 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G111000 [exp] 88 / 7e-23 AT1G70830 175 / 8e-57 MLP-like protein 28 (.1.2.3.4.5) Potri.017G051200 [exp] 59 / 7e-12 AT1G70840 116 / 3e-34 MLP-like protein 31 (.1) Potri.017G051100 [exp] 57 / 6e-11 AT1G70840 115 / 3e-33 MLP-like protein 31 (.1) Potri.008G131300 [exp] 50 / 3e-08 AT1G14930 100 / 1e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G131100 [exp] 49 / 5e-08 AT1G70890 107 / 3e-30 MLP-like protein 43 (.1) Potri.008G131200 [exp] 41 / 6e-05 AT1G14930 122 / 4e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10012467 pacid=23145772 polypeptide=Lus10012467 locus=Lus10012467.g ID=Lus10012467.BGIv1.0 annot-version=v1.0 ATGAATGATCCAGTTGCTAGCATCGAGCTTTGCCCAATTGGCCCCGGAGTCGCAATCGGGCAAGGTGGAGGCACAGTTTGCCATCAGACTTGCTGCAAAA TAATTCCACAGTATCTTCAGTGCCAGACCTCACCATGTTTCCAACATGGCCCTAACAAGATCAAGAGCTGCGCTATGCATCAAGGCGACTGGGGCAAAAA GGGCACCGCCATTGTCTGGGACTACATCCACGGGGATATAACAAAGGATTACAAGGAGTTTAAGATAACTGTGAAGGCGACTCCTCAATCAGCAGAGACA AGTCTGATCCATTGGACGCTGGAGTATGAGAAGCTGAGTGAGGGCTTTCTTGACACGGATGTCATCTCCATTCTTAACTTCGTTGTCCACGTGAGCAAAG ACATTGATGATCACCACACCAACCGCAACAACTAG
AA sequence Show only first row Show all	>Lus10012467 pacid=23145772 polypeptide=Lus10012467 locus=Lus10012467.g ID=Lus10012467.BGIv1.0 annot-version=v1.0 MNDPVASIELCPIGPGVAIGQGGGTVCHQTCCKIIPQYLQCQTSPCFQHGPNKIKSCAMHQGDWGKKGTAIVWDYIHGDITKDYKEFKITVKATPQSAET SLIHWTLEYEKLSEGFLDTDVISILNFVVHVSKDIDDHHTNRNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	0	1
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10000880 [exp]	1.0	0.9198
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	1.4	0.9130
					Lus10005608 [exp]	2.4	0.8884
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10026598 [exp]	6.3	0.8048
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10024728 [exp]	7.9	0.8410
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10032324 [exp]	8.7	0.8577
AT1G55790			Domain of unknown function (DU...		Lus10032899 [exp]	10.4	0.7683
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Lus10019064 [exp]	10.4	0.8207
					Lus10019580 [exp]	10.8	0.8107
AT1G53830		ATPME2	pectin methylesterase 2 (.1)		Lus10027556 [exp]	11.8	0.8642

Compare expression of checked genes

Lus10012467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.