Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61330 345 / 5e-116 rRNA processing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020496 [exp] 620 / 0 AT5G61330 366 / 2e-124 rRNA processing protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G085100 [exp] 402 / 7e-139 AT5G61330 409 / 8e-141 rRNA processing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08164 [flax] [poplar] TRAUB Apoptosis-antagonizing transcription factor, C-terminal
Representative CDS sequence Show only first row Show all	>Lus10012469 pacid=23145793 polypeptide=Lus10012469 locus=Lus10012469.g ID=Lus10012469.BGIv1.0 annot-version=v1.0 ATGCAGACGGTCGAACAGGATAGTGATCATGAATATGTGGACGAGGAGGAAAACGAAGATGGTACGGACCAGGAAGGAGATGAGGAAGATGAGGAGGAGA ATTCTGATGAAGATGAGAACAAAGAAATTGGCTCTAGTGAGGACGAGGAAGAGGGAATTGAAGAGATTGGTTTACTAAAGAATATCGCTCACAAAGATGA CGAGTTGGAAGATCTCAATAAGGAATACAGGGACCTCCAAAATCAACAACTAGACTTTTTGAAGAACCTCAAACGCCATAAAGAAGAAGATATTCTTAAA GGTCAAGCTGTTAAGAACCAGAAGGCTATCTGGGAATTGAGTCTTGGACTTAGGTTCTCACTTCAGGAACCATTCTCAAATTCAAATAGACTTCCACTGG AACCTATTCGGTCTACATTTTGCGATTCAGATAAAAGAGTGAGGGAGGCTTATGATGATCTCGTTGTCTCATCCAAAAAGACTATGGAATCTCTAGTCGA ACTAGAAGAGGCTCTACTCGAGAGGAATCCTTCAATTTCTCAATCATCCACTGGTAATATAGGGAAGTCTTTGAAGAAGCAGTCCACTCACTTGAATGAC GAAGACGAGGAAGAATGGTCTAGAATTTCAAAATTGCATACAAGGACAGCTACTTTCAGAAATAAATCCATTGATAAATGGCAGAGAAGGTCACAAGTTA CAACTGGTGCAGCAGCTATTACGAACAAGTTGCATGCTTTCAATCAGAATATAAGCGAACAAGTTGCTGCATCTATGAGGGATTCGAGCAAAATGGTTAA GCAAATGCAGTTGATAAGGTCCACTGCTAGAGTTTTTGGTGATGTTACATCCCGGGAAAGCAGTCTTAACAGCGAGGAGGCACAACCTGATGGGGACCCC GAACTTTTTGATGATGCTGAGTTTCGTCAACGACTACTTGTGGAATTCTATAAAACAGTTGATGCAGACTCAACGGAAAGGGCACTTTATGCTCTTAAAA GAGATCAAACTAAGAAGAGAAAGATTGTGGACCGGCGCGCCTCAAAGTACCGCAAGATCAGGCATAGTGTACACGAGAAGATTGTGAATTTCATGGCTCC TCAGCATGTGGTTCGTCCGCCTATGACTGATAAACTACTTGAGAATTTGTTCGGTCTCAAGAGACCAAAAGCGTCGAACACACATTCTGGTGGTGCAATG TGA
AA sequence Show only first row Show all	>Lus10012469 pacid=23145793 polypeptide=Lus10012469 locus=Lus10012469.g ID=Lus10012469.BGIv1.0 annot-version=v1.0 MQTVEQDSDHEYVDEEENEDGTDQEGDEEDEEENSDEDENKEIGSSEDEEEGIEEIGLLKNIAHKDDELEDLNKEYRDLQNQQLDFLKNLKRHKEEDILK GQAVKNQKAIWELSLGLRFSLQEPFSNSNRLPLEPIRSTFCDSDKRVREAYDDLVVSSKKTMESLVELEEALLERNPSISQSSTGNIGKSLKKQSTHLND EDEEEWSRISKLHTRTATFRNKSIDKWQRRSQVTTGAAAITNKLHAFNQNISEQVAASMRDSSKMVKQMQLIRSTARVFGDVTSRESSLNSEEAQPDGDP ELFDDAEFRQRLLVEFYKTVDADSTERALYALKRDQTKKRKIVDRRASKYRKIRHSVHEKIVNFMAPQHVVRPPMTDKLLENLFGLKRPKASNTHSGGAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61330			rRNA processing protein-relate...		Lus10012469 [exp]	0	1
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10038425 [exp]	2.6	0.8842
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	7.1	0.8511
AT1G42440			unknown protein		Lus10013232 [exp]	9.5	0.8610
AT1G29320			Transducin/WD40 repeat-like su...		Lus10023861 [exp]	10.5	0.8312
AT5G26680			5'-3' exonuclease family prote...		Lus10000270 [exp]	12.6	0.8264
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10014680 [exp]	15.2	0.8296
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10037214 [exp]	15.2	0.7975
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10041189 [exp]	15.9	0.8091
AT2G31740			S-adenosyl-L-methionine-depend...		Lus10016656 [exp]	16.0	0.8315
AT5G07670			RNI-like superfamily protein (...		Lus10038927 [exp]	16.2	0.8288

Compare expression of checked genes

Lus10012469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.